Publications from Natural Sciences

Follow the latest publications from the Faculty of Natural Sciences.

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Song, Y. J. C., Lundvig, D. M. S., Huang, Y., Gai, W. P., Blumbergs, P. C., Højrup, P., Otzen, D., Halliday, G. M. & Jensen, P. H. (2007). p25a Relocalizes in Oligodendroglia from Myelin to Cytoplasmic Inclusions in Multiple System Atrophy. Am. J. Path., (171), 1291-1303.

Andersen, H. H. (2001). p-filtrations and the Steinberg module. Journal of Algebra, 244(2), 644-683.

Barndorff-Nielsen, O. E. (1990). p* and Laplace's method. Brazilian Journal of Probability and Statistics, 4(2), 89-15103.

Cedhagen, T. (1994). opalinater (Opalinata). In Nationalencyklopedin (Vol. 14, pp. 451). Bokförlaget Bra Böcker.

Cedhagen, T. (1994). ookinet. In Nationalencyklopedin (Vol. 14, pp. 449). Bokförlaget Bra Böcker.

Cedhagen, T. (1994). oocyst. In Nationalencyklopedin (Vol. 14, pp. 449). Bokförlaget Bra Böcker.

Cedhagen, T. (1994). onchosphaera. In Nationalencyklopedin (Vol. 14, pp. 446). Bokförlaget Bra Böcker.

Cedhagen, T. (1994). obeväpnad bandmask (Taeniarhynchus saginatus). In Nationalencyklopedin (Vol. 14, pp. 371). Bokförlaget Bra Böcker.

Thatcher, Z., Liu, C. H., Yang, L., McBride, B. C., Thinh Tran, G., Wustrow, A., Karlsen, M. A., Neilson, J. R., Ravnsbæk, D. B. & Billinge, S. J. L. (2022). nmfMapping: a cloud-based web application for non-negative matrix factorization of powder diffraction and pair distribution function datasets. Acta Crystallographica Section A: Foundations and Advances, 78, 242-248. https://doi.org/10.1107/S2053273322002522

Juul, M., Madsen, T., Guo, Q., Bertl, J., Hobolth, A., Kellis, M. & Pedersen, J. S. (2019). ncdDetect2: Improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation. Bioinformatics, 35(2), 189-199. https://doi.org/10.1093/bioinformatics/bty511

Cedhagen, T. (1994). myxamöbor. In Nationalencyklopedin (Vol. 13, pp. 559). Bokförlaget Bra Böcker.

Pedersen, H. S., Løvendahl, P., Larsen, K. E., Madsen, L. B. & Callesen, H. (2014). mtDNA copy number in oocytes of different sizes from individual pre- and post-pubertal pigs. Reproduction, Fertility and Development, 27(1), 181-182. [(abst 181)]. https://doi.org/10.1071/RDv27n1Ab181

Højsgaard, S. (2003). minR - A package for graphical modelling in R. In Proceedings 3rd. DSCl Workshop (pp. 9) http://www.ci.tuwien.ac.at

Højsgaard, S., Jørgensen, E. & Edwards, D. (2003). mimR - a statistical package for (among other things) estimation of sensitivity and specificity of diagnostic tests in absence of golden standard. In Proceedings, (CD-rom communication) (pp. Abstract no 389)

Højsgaard, S. (2002). mimR (version 1.0). An interface from R to MIM for graphical modelling in R. Internal Report 2002 No. 06

Cedhagen, T. (1994). mikrosporidier. In Nationalencyklopedin (Vol. 13, pp. 308). Bokförlaget Bra Böcker.

Cedhagen, T. (1994). mikronemata. In Nationalencyklopedin (Vol. 13, pp. 306). Bokförlaget Bra Böcker.

Cedhagen, T. (1994). mikrofilarier. In Nationalencyklopedin (Vol. 13, pp. 303). Bokförlaget Bra Böcker.

Silber, J. (2008). microRNAs in gliomagenesis and neural stem cell differentiation.

Holt, D. B., Gupta, V., Meyer, D., Abel, N. B., Andersen, S. U., Stougaard, J. & Markmann, K. (2015). micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules. New Phytologist, 208(1), 241-256. https://doi.org/10.1111/nph.13445

Hansen, T. B., Venø, M. T., Kjems, J. & Damgaard, C. K. (2014). miRdentify: high stringency miRNA predictor identifies several novel animal miRNAs. Nucleic Acids Research, 42(16), 1-11. [e124]. https://doi.org/10.1093/nar/gku598

Hansen, T. B., Wiklund, E. D., Bramsen, J. B., Villadsen, S. B., Statham, A. L., Clark, S. J. & Kjems, J. (2011). miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA. E M B O Journal, 30(21), 4414-4422. https://doi.org/10.1038/emboj.2011.359

Ostenfeld, M. S., Jensen, S. G., Jeppesen, D. K., Christensen, L-L., Thorsen, S. B., Stenvang, J., Hvam, M. L., Thomsen, A. R., Mouritzen, P., Rasmussen, M. H., Nielsen, H. J., Ørntoft, T. F. & Andersen, C. L. (2016). miRNA profiling of circulating EpCAM(+) extracellular vesicles: promising biomarkers of colorectal cancer. Journal of Extracellular Vesicles, 5, 31488. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5005366/pdf/JEV-5-31488.pdf

Hua, Y., Duan, S., Murmann, A. E., Larsen, N., Kjems, J., Lund, A. H. & Peter, M. E. (2011). miRConnect:Identifying effector genes of miRNAs and miRNA families in cancer cells. P L o S One, 6(10), e26521. https://doi.org/10.1371/journal.pone.0026521

Hua, Y., Larsen, N., Kalyana-Sundaram, S., Kjems, J., Chinnaiyan, A. M. & Peter, M. E. (2013). miRConnect 2.0: identification of oncogenic, antagonistic miRNA families in three human cancers. B M C Genomics, 14(179), 1-18. https://doi.org/10.1186/1471-2164-14-179

Menbari, M. N., Rahimi, K., Ahmadi, A., Mohammadi-Yeganeh, S., Elyasi, A., Darvishi, N., Hosseini, V. & Abdi, M. (2020). miR-483-3p suppresses the proliferation and progression of human triple negative breast cancer cells by targeting the HDAC8>oncogene. Journal of Cellular Physiology, 235(3), 2631-2642. https://doi.org/10.1002/jcp.29167

Daugaard, I., Sanders, K. J., Idica, A., Vittayarukskul, K., Hamdorf, M., Krog, J. D., Chow, R., Jury, D., Hansen, L. L., Hager, H., Lamy, P., Choi, C. L., Agalliu, D. & Zisoulis, D. G. (2017). miR-151a induces partial EMT by regulating E-cadherin in NSCLC cells. Oncogenesis, 6(7), e366. https://doi.org/10.1038/oncsis.2017.66

Ostenfeld, M. S., Bramsen, J. B., Lamy, P., Villadsen, S. B., Fristrup, N., Ulhøi, B. P., Borre, M., Kjems, J., Dyrskjøt, L. & Ørntoft, T. F. (2009). miR-145 induces caspase-dependent and -independent cell death in urothelial cancer cell lines with targeting of an expression signature present in Ta bladder tumors. Oncogene. https://doi.org/10.1038/onc.2009.395

Ostenfeld, M. S., Bramsen, J. B., Lamy, P., Villadsen, S. B., Fristrup, N., Dalsgaard Sørensen, K., Ulhøi, B. P., Borre, M., Kjems, J., Andersen, L. D. & Ørntoft, T. F. (2010). miR-145 induces caspase-dependent and -independent cell death in urothelial cancer cell lines with targeting of an expression signature present in Ta bladder tumors. Oncogene, 29(7), 1073. https://doi.org/10.1038/onc.2009.395

Hartmann, H., Hoehne, K., Rist, E., Louw, A. M. & Schlosshauer, B. (2015). miR-124 disinhibits neurite outgrowth in an inflammatory environment. Cell and Tissue Research, 362(1), 9-20. https://doi.org/10.1007/s00441-015-2183-y

Cedhagen, T. (1994). mareld. In Nationalencyklopedin (Vol. 13, pp. 68). Bokförlaget Bra Böcker.

Cedhagen, T. (1993). makronukleus. In Nationalencyklopedin (Vol. 12, pp. 636). Bokförlaget Bra Böcker.

Jia, J-J., Lahr, R. M., Solgaard, M. T., Moraes, B. J., Pointet, R., Yang, A-D., Celucci, G., Graber, T. E., Hoang, H-D., Niklaus, M. R., Pena, I. A., Hollensen, A. K., Smith, E. M., Chaker-Margot, M., Anton, L., Dajadian, C., Livingstone, M., Hearnden, J., Wang, X-D. ... Fonseca, B. D. (2021). mTORC1 promotes TOP mRNA translation through site-specific phosphorylation of LARP1. Nucleic Acids Research, 49(6), 3461-3489. https://doi.org/10.1093/nar/gkaa1239

Mühlemann, O. & Jensen, T. H. (2012). mRNP quality control goes regulatory. Trends in Genetics, 28(2), 70-77. https://doi.org/10.1016/j.tig.2011.11.001

Cedhagen, T. (1993). lobopodier. In Nationalencyklopedin (Vol. 12, pp. 412). Bokförlaget Bra Böcker.

Toftegaard, J., Lühr, A. C. & Bassler, N. (2010). libdEdx - a Stopping Power Library. Poster session presented at MC 2010, Stockholm, Sweden. http://phys.au.dk/uploads/media/MC2010_poster_libdedx_Jakob_01.pdf

Cedhagen, T. (1993). levermask. In Nationalencyklopedin (Vol. 12, pp. 249). Bokförlaget Bra Böcker.

Szotek, Z., Temmerman, W. M., Svane, A., Petit, L., Strange, P., Stocks, G. M., Ködderitzsch, D., Hergert, W. & Winter, H. (2004). lectronic structure of half-metallic ferromagnets and spinel ferromagnetic insulators. J. Phys..: Condens. Matter, 16, 5587-5587.

Cedhagen, T. (1993). laxdjävul. In Nationalencyklopedin (Vol. 12, pp. 175). Bokförlaget Bra Böcker.

Cedhagen, T. (1993). labyrintamöbor. In Nationalencyklopedin (Vol. 12, pp. 52). Bokförlaget Bra Böcker.

Cedhagen, T. (1993). kringsjuka. In Nationalencyklopedin (Vol. 11, pp. 414). Bokförlaget Bra Böcker.

Cedhagen, T. (1993). kraggisseldjur. In Nationalencyklopedin (Vol. 11, pp. 380). Bokförlaget Bra Böcker.

Cedhagen, T. (1993). konoid. In Nationalencyklopedin (Vol. 11, pp. 253). Bokförlaget Bra Böcker.

Cedhagen, T. (1993). konjugation. In Nationalencyklopedin (Vol. 11, pp. 247). Bokförlaget Bra Böcker.

Cedhagen, T. (1993). knoppning. In Nationalencyklopedin (Vol. 11, pp. 127). Bokförlaget Bra Böcker.

Cedhagen, T. (1993). kinesisk levermask. In Nationalencyklopedin (Vol. 11, pp. 40). Bokförlaget Bra Böcker.

Vosegaard, T. (2015). jsNMR: An Embedded Platform-Independent NMR Spectrum Viewer. Magnetic Resonance in Chemistry, 53(4), 285-290. https://doi.org/10.1002/mrc.4195

Larsen, P. F., Nielsen, E. E., Williams, T. D. & Loeschcke, V. (2008). intraspecific variation in expression of candidate genes for osmoregulation, heme biosynthesis and stress resistance suggests local adaptation in European flounder (Platichthys flesus). Heredity, 101, 247-259.

Veerasawmy, R., Ludvigsen, M. & Fogtmann, M. H. (2008). iSport: Varieties of physical interactions in social contexts. In J. Sturm, T. Bekker & E. Barakova (Eds.), Proceedings of the 1st workshop on Design for Social Interaction through Physical Play (pp. 51-56).

Vosegaard, T. (2018). iSpec: A Web-Based Activity for Spectroscopy Teaching. Journal of Chemical Education, 95(1), 90-103. https://doi.org/10.1021/acs.jchemed.7b00482

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