Publications

Follow the latest publications from the Faculty of Natural Sciences.

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Woodward, G., Ebenman, B., Emmerson, M., Montoya, J. M., Olesen, J. M., Valido, A. & Warren, P. H. (2005). Body-size determinants of the structure and dynamics of ecological networks: scaling from the individual to the ecosystem. In P. D. Ruiter, V. Wolters & J. Moore (Eds.), Dynamic Food Webs: Multispecies assemblages, ecosystem development and environmental change

Woodward, G., Benstead, J. P., Beveridge, O. S., Blanchard, J., Brey, T., Brown, L. E., Cross, W. F., Friberg, N., Ings, T. C., Jacob, U., Jennings, S., Ledger, M. E., Milner, A. M., Montoya, J. M., O'Gorman, E., Olesen, J. M., Petchey, O. L., Pichler, D. E., Reuman, D. C. ... Yvon-Durocher, G. (2010). Ecological Networks in a Changing Climate. Advances in Ecological Research, 42, 71-138. https://doi.org/10.1016/S0065-2504(10)42002-4

Woodruff, D. P. & Zhang, Q. (2011). Tight Bounds for Distributed Functional Monitoring. http://arxiv.org/abs/1112.5153

Woodcock, J., Andersen, M. S., Aranha, D. F., Hallerstede, S., Hansen, S. T., Jakobsen, N. K., Kulik, T., Larsen, P. G., Macedo, H. D., Martin, C. I. I. & Norrild, V. A. M. (2023). State of the Art Report: Verified Computation. https://doi.org/10.48550/arXiv.2308.15191

Wood, S. C., Johansen, K. & Weber, R. E. (1975). Effects of ambient PO2 on hemoglobin-oxygen affinity and red cell ATP concentrations in a benthic fish, Pleuronectes platessa. Respiration Physiology, 25(3), 259-67.

Wood, S. C., Weber, R. E. & Powers, D. (1979). Respiratory properties of blood and hemoglobin solutions from the piranha. Comparative Biochemistry and Physiology (historisk, uspecificeret), 62A, 163-167.

Wood, S. C., Lykkeboe, G., Johansen, K., Weber, R. E. & Maloiy, G. M. O. (1978). Temperature acclimation in the pancake tortoise, Malacochersus tornieri: metabolic rate, blood pH, oxygen affinity and red cell organic phosphates. Comparative Biochemistry and Physiology (historisk, uspecificeret), 59A, 155-160.

Wood, S. C., Lykkeboe, G., Johansen, K. & Weber, R. E. (1977). A mechanism of temperature-induced changes in oxygen affinity of blood. The Physiologist, 20, 102.

Wood, S. C., Weber, R. E., Maloiy, G. M. O. & Johansen, K. (1975). Oxygen uptake and blood respiratory properties of the caecilian Boulengerula taitanus. Respiration Physiology, 24, 355-363.

Wood, K., Paz, A., Dijkstra, K., Scheek, R. M., Otten, R., Silman, I., Sussman, J. L. & Mulder, F. A. A. (2012). Backbone and side chain NMR assignments for the intrinsically disordered cytoplasmic domain of human neuroligin-3. Biomolecular N M R Assignments, 6(1), 15-8. https://doi.org/10.1007/s12104-011-9315-4

Wood, K., Gallat, F.-X., Otten, R., van Heel, A. J., Lethier, M., van Eijck, L., Moulin, M., Haertlein, M., Weik, M. & Mulder, F. A. A. (2013). Protein Surface and Core Dynamics Show Concerted Hydration-Dependent Activation. Angewandte Chemie International Edition, 52(2), 665-668. https://doi.org/10.1002/anie.201205898

Wood, R. E., Higham, T. F. G., Buzilhova, A., Suvorov, A., Heinemeier, J. & Olsen, J. (2013). Freshwater radiocarbon reservoir effects at the burial ground of Minino, northwest Russia. Radiocarbon: An International Journal of Cosmogenic Isotope Research, 55(1), 163-177. https://doi.org/10.2458/azu_js_rc.v55i1.16448

Wood, J. M., Sanei, H., Haeri-Ardakani, O., Curtis, M. E., Akai, T. & Currie, C. (2018). Solid bitumen in the Montney Formation: Diagnostic petrographic characteristics and significance for hydrocarbon migration. International Journal of Coal Geology, 198, 48-62. https://doi.org/10.1016/j.coal.2018.09.004

Wood, C. M., Boyajian, T., von Braun, K., Brewer, J. M., Crepp, J. R., Schaefer, G., Adams, A. & White, T. R. (2019). Benchmarking Substellar Evolutionary Models Using New Age Estimates for HD 4747 B and HD 19467 B. Astrophysical Journal, 873(1), Article 83. https://doi.org/10.3847/1538-4357/aafe01

Wood, J. M., Haeri-Ardakani, O., Sanei, H., Curtis, M. E. & Royer, D. (2020). Application of paleoporosity and bitumen saturation concepts to tight-gas accumulations containing solid bitumen. International Journal of Coal Geology, 228, Article 103547. https://doi.org/10.1016/j.coal.2020.103547

Wood, J. M., Curtis, M. E., Ardakani, O. H. & Sanei, H. (2021). Movement of native fluids during scanning electron microscopy imaging of petroliferous siltstones: Evidence from the Montney Formation, western Canada. Fuel, 290, Article 120020. https://doi.org/10.1016/j.fuel.2020.120020

Wood, J. M., Cesar, J., Ardakani, O. H., Rudra, A. & Sanei, H. (2022). Geochemical evidence for the internal migration of gas condensate in a major unconventional tight petroleum system. Scientific Reports, 12(1), Article 7931. https://doi.org/10.1038/s41598-022-11963-6

Woo, T. F. (2024). The neural representation of sequences in the medial prefrontal cortex. [PhD dissertation, Aarhus University]. Aarhus University.

Wong, Y. Y. Y., Hannestad, S., Mirizzi, A. & Raffelt, G. (2009). Cosmological limits on axions. AIP Conference Proceedings, (1), 303-307. https://doi.org/10.1063/1.3131516

Wong, B. T., Zhai, J., Hoffmann, S. V., Augustin, M., Wooster, T. J. & Day, L. (2012). Conformational changes to deamidated wheat gliadins and b-casein upon adsorption to oil-water emulsion interfaces. Food Hydrocolloids, 27(1), 91-101. https://doi.org/10.1016/j.foodhyd.2011.08.012

Wong, B. & Kjærgaard, R. S. (2012). Pencil and paper. A unique set of tools facilitate thinking and hypothesis generation. Nature Methods, 9(11), 1037. https://doi.org/doi:10.1038/nmeth.2223

Wong, J. E. M. M., Alsarraf, H. M. A. B., Kaspersen, J. D., Pedersen, J. S., Stougaard, J., Thirup, S. S. & Blaise, M. (2014). Cooperative binding of LysM domains determines the carbohydrate affinity of a bacterial endopeptidase protein. FEBS journal, 281(4), 1196-1208. https://doi.org/10.1111/febs.12698

Wong, J. & Blaise, M. (2013). Cloning, expression, purification, crystallization and preliminary crystallographic analysis of the putative NlpC/P60 endopeptidase, TTHA0266, from Thermus thermophilus HB8. Acta Crystallographica. Section F: Structural Biology and Crystallization Communications Online, 69(11), 1291-1294. https://doi.org/10.1107/S1744309113027164

Wong, J. E. M. M., Midtgaard, S. R., Gysel, K., Thygesen, M. B., Sørensen, K. K., Jensen, K. J., Stougaard, J., Thirup, S. & Blaise, M. (2015). An intermolecular binding mechanism involving multiple LysM domains mediates carbohydrate recognition by an endopeptidase. Acta crystallographica Section D: Structural biology , 71(Pt 3), 592-605. https://doi.org/10.1107/S139900471402793X

Wong, A., Bryzek, D., Dobosz, E., Scavenius, C., Svoboda, P., Rapala-Kozik, M., Lesner, A., Frydrych, I., Enghild, J., Mydel, P., Pohl, J., Thompson, P. R., Potempa, J. & Koziel, J. (2018). A Novel Biological Role for Peptidyl-Arginine Deiminases: Citrullination of Cathelicidin LL-37 Controls the Immunostimulatory Potential of Cell-Free DNA. Journal of Immunology, 200(7), 2327-2340. https://doi.org/10.4049/jimmunol.1701391

Wong, J. E. M. M., Nadzieja, M., Madsen, L. H., Bücherl, C. A., Dam, S., Sandal, N. N., Couto, D., Derbyshire, P., Uldum-Berentsen, M., Schroeder, S., Schwämmle, V., Nogueira, F. C. S., Asmussen, M. H., Thirup, S., Radutoiu, S., Blaise, M., Andersen, K. R., Menke, F. L. H., Zipfel, C. & Stougaard, J. (2019). A Lotus japonicus cytoplasmic kinase connects Nod factor perception by the NFR5 LysM receptor to nodulation. Proceedings of the National Academy of Sciences (PNAS), 116(28), 14339-14348. https://doi.org/10.1073/pnas.1815425116

Wong, J. E. M. M., Gysel, K., Birkefeldt, T. G., Vinther, M., Muszyński, A., Azadi, P., Laursen, N. S., Sullivan, J. T., Ronson, C. W., Stougaard, J. & Andersen, K. R. (2020). Structural signatures in EPR3 define a unique class of plant carbohydrate receptors. Nature Communications, 11, Article 3797. https://doi.org/10.1038/s41467-020-17568-9

Wong, J. E. M. M. & Blaise, M. (2020). Report of false positives when using zymography to assess peptidoglycan hydrolytic activity of an endopeptidase with multiple LysM domains. Biochimie, 177, 25-29. https://doi.org/10.1016/j.biochi.2020.07.014

Wong, E., Esquivel, J. S., Leiva, G., Grønbæk, J. E. & Velloso, E. (2024). Practice-informed Paterns for Organising Large Groups in Distributed Mixed Reality Collaboration. In CHI 2024 - Proceedings of the 2024 CHI Conference on Human Factors in Computing Sytems Article 1030 Association for Computing Machinery. https://doi.org/10.1145/3613904.3642502

Wong, E., Grønbæk, J. E. & Velloso, E. (2024). The Jamais Vu Effect: Understanding the Fragile Illusion of Co-presence in Mixed Reality. In A. Vallgarda, L. Jonsson, J. Fritsch, S. F. Alaoui & C. A. Le Dantec (Eds.), DIS '24: Proceedings of the 2024 ACM Designing Interactive Systems Conference (pp. 2227-2246). Association for Computing Machinery. https://doi.org/10.1145/3643834.3661574

Wong, E., Genay, A., Grønbæk, J. E. & Velloso, E. (2025). Spatial Heterogeneity in Distributed Mixed Reality Collaboration. In CHI 2025 - Proceedings of the 2025 CHI Conference on Human Factors in Computing Systems Article 980 Association for Computing Machinery. https://doi.org/10.1145/3706598.3714033

Wong, M. M. J. E. (2017). Structural and Biochemical Studies of LysM Proteins.

Wolter, B., Pullen, M. G., Le, A. .-T., Baudisch, M., Doblhoff-Dier, K., Senftleben, A., Hemmer, M., Schroeter, C. D., Ullrich, J., Pfeifer, T., Moshammer, R., Graefe, S., Vendrell, O., Lin, C. D. & Biegert, J. (2016). Ultrafast electron diffraction imaging of bond breaking in di-ionized acetylene. Science, 354(6310), 308-312. https://doi.org/10.1126/science.aah3429

Wollesen De Jonge, R., Elm, J., Rosati, B., Christiansen, S., Hyttinen, N., Lüdemann, D., Bilde, M. & Roldin, P. (2021). Secondary aerosol formation from dimethyl sulfide-improved mechanistic understanding based on smog chamber experiments and modelling. Atmospheric Chemistry and Physics, 21(13), 9955-9976. https://doi.org/10.5194/acp-21-9955-2021

Wollesen, M., Mikkelsen, K., Tvilum, M. S., Vestergaard, M., Wang, M., Meyer, R. L., Ingmer, H., Poulsen, T. & Tørring, T. (2023). Polyether Ionophore Antibiotics Target Drug-Resistant Clinical Isolates, Persister Cells, and Biofilms. Microbiology Spectrum, 11(4), Article e0062523. https://doi.org/10.1128/spectrum.00625-23

Wolkenhauer, O. & Green, S. (2013). The search for organizing principles as a cure against reductionism in systems medicine. FEBS journal, 280(23), 5938-5948. https://doi.org/10.1111/febs.12311

Wolfs, J. L., Comfurius, P., Rasmussen, J. T., Keuren, J. F., Lindhout, T., Zwaal, R. F. & Bevers, E. M. (2005). Activated scramblase and inhibited aminophospholipid translocase cause phosphatidylserine exposure in a distinct platelet fraction. Cellular and Molecular Life Sciences, 62, 1514-1525.

Wolf Pérez, A.-M., Sormanni, P., Andersen, J. S., Sakhnini, L. I., Rodriguez-Leon, I., Bjelke, J. R., Gajhede, A. J., De Maria, L., Otzen, D. E., Vendruscolo, M. & Lorenzen, N. (2019). In vitro and in silico assessment of the developability of a designed monoclonal antibody library. mAbs, 11(2), 388-400. https://doi.org/10.1080/19420862.2018.1556082

Wolf Pérez, A.-M. (2019). In silico and in vitro biophysical screening methods for proteins.

Wolfgram, P., Christensen, N. B. & Sattel, D. (2003). Approximate 2D inversion of AEM data. Paper presented at 16th Geophysical Conference and Exhibition of the Australian Society of Exploration Geophysicists (ASEG), Adelaide.

Wolfgram, P., Sattel, D. & Christensen, N. B. (2003). Approximate 2D inversion of AEM data. Exploration Geophysics, 34, 29-33.

Wolff, S., Larsen, P. G., Lausdahl, K., Ribeiro, A. & Toftegaard, T. S. (2009). Facilitating Home Automation Through Wireless Protocol Interoperability. Proceedings of the Wireless Personal Multimedia Communications Symposia.

Wolff, S., Rohde, J., Toftegaard, T. S., Larsen, P. G., Lausdahl, K. G., Ribeiro, A. & Stender, M. H. (2010). Optimizing Energy Usage in Private Households. In R. Prasad, S. Ohmori & D. Šimunić (Eds.), Towards Green ICT (pp. 185-210). River Pulishers.

Wölfel, C. & Merritt, T. (2013). Method card design dimensions: A survey of card-based design tools. In P. Kotzé et al. (Ed.), Human-Computer Interaction – INTERACT 2013: 14th IFIP TC 13 International Conference, Cape Town, South Africa, September 2-6, 2013, Proceedings, Part I (pp. 479-486). Springer VS. https://doi.org/10.1007/978-3-642-40483-2_34

Wolf, A., Lammich, L., Strasser, D., Altevogt, S., Andrianarijaona, V., Buhr, H., Heber, O., Kreckel, H., Pedersen, H. B., Schwalm, D. & Zajfman, D. (2004). Storage ring experiments with cold molecular ions: the H₃⁺ Puzzle. Physica Scripta, T110, 193-199.

Wolf, A., Kreckel, H., Motsch, M., Mikosch, J., Glosik, J., Plasil, R., Altevogt, S., Andrianarijaona, V., Buhr, H., Hoffmann, J., Lammich, L., Lestinski, M., Nevo, I., Novotny, S., Orlov, D. A., Pedersen, H. B., Sprenger, F., Terekhov, A. S., Toker, J. ... Zajfman, D. (2006). Effects of molecular rotation in low-energy electron collisions of H₃⁺. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 364, 2981-2997.

Wolf, A., Pedersen, H. B., Lammich, L., Jordon-Thaden, B., Altevogt, S., Domesle, C., Hergenhahn, U., Förstel, M. & Heber, O. (2010). Soft x-ray fragmentation studies of molecular ions. Journal of Physics B: Atomic, Molecular and Optical Physics, 43(19), 194007. https://doi.org/10.1088/0953-4075/43/19/194007

Wolf, G., Mikkelsen, J. G., Nielsen, A. L. & Pedersen, F. S. (2013). Epigenetic marking and repression of porcine endogenous retroviruses. Journal of General Virology, 94(5), 960- 970. https://doi.org/10.1099/vir.0.049288-0

Wolf, H., Leusser, D., Jørgensen, M. R. V., Herbst-Irmer, R., Chen, Y. S., Scheidt, E. W., Scherer, W., Iversen, B. B. & Stalke, D. (2014). Phase Transition of [2,2]-Paracyclophane - An End to an Apparently Endless Story. Chemistry: A European Journal, 20(23), 7048-7053. https://doi.org/10.1002/chem.201304972

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