Publications

Follow the latest publications from the Faculty of Natural Sciences.

Gorczyca, I., Suski, T., Staszczak, G., Wang, X. Q., Christensen, N. E., Svane, A., Dimakis, E. & Moustakas, T. D. (2014). Short period polar and nonpolar m InN/n GaN superlattices. Physica Status Solidi. C: Current Topics in Solid State Physics, 11(3-4), 678–681. https://doi.org/10.1002/pssc.201300424

Munksgaard, P. S., Skals, M. G., Reinholdt, J., Poulsen, K., Jensen, M. R., Yang, C., Leipziger, J., Vorup-Jensen, T. & Praetorius, H. A. (2014). Sialic acid residues are essential for cell lysis mediated by leukotoxin from Aggregatibacter actinomycetemcomitans. Infection and Immunity, 82(6), 2219-28. https://doi.org/10.1128/IAI.01647-14

Toker, Y., Schwalm, D., Andersen, L. H., Heber, O. & Zajfman, D. (2014). Sidebands from longitudinal bunch oscillations in an electrostatic ion beam trap. Journal of Instrumentation, 9, Article 04008. https://doi.org/10.1088/1748-0221/9/04/P04008

Petersen, M., Hofius, D. & Andersen, S. U. (2014). Signaling unmasked: Autophagy and catalase promote programmed cell death. Autophagy, 10(3), 520-521. https://doi.org/10.4161/auto.27564

Levi, E. E., Cakiroglu, A. I., Bucak, T., Odgaard, B. V., Davidson, T. A., Jeppesen, E. & Beklioglu, M. (2014). Similarity between contemporary vegetation and plant remains in the surface sediment in Mediterranean lakes. Freshwater Biology, 59(4), 724–736. https://doi.org/10.1111/fwb.12299, https://doi.org/10.1111/fwb.12299

Arge, L., Truelsen, J. & Yang, J. (2014). Simplifying massive planar subdivisions. In C. C. McGeoch & U. Meyer (Eds.), 2014 Proceedings of the Sixteenth Workshop on Algorithm Engineering and Experiments (ALENEX) (pp. 20-30). Society for Industrial and Applied Mathematics. https://doi.org/10.1137/1.9781611973198.3

Schneider, F. D., Leiterer, R., Morsdorf, F., Gastellu-Etchegorry, J. P., Lauret, N., Pfeifer, N. & Schaepman, M. E. (2014). Simulating imaging spectrometer data: 3D forest modeling based on LiDAR and in situ data. Remote Sensing of Environment, 152, 235-250. https://doi.org/10.1016/j.rse.2014.06.015

Nørmark, E., Bendixen, C., Jensen, J. B. & Clausen, O. R. (2014). Simultaneous acquisition of airgun seismic and high resolution sparker data - Combining the two types of data. In 1st Applied Shallow Marine Geophysics Conference, Part of Near Surface Geoscience 2014 European Association of Geoscientists and Engineers. https://doi.org/10.3997/2214-4609.20142128

Balkanski, E., Branzei, S., Kurokawa, D. & Procaccia, A. D. (2014). Simultaneous Cake Cutting. In Proceedings of the 28th AAAI Conference on Artificial Intelligence AAAI Press. http://www.aaai.org/ocs/index.php/AAAI/AAAI14/schedConf/presentations

Zeng, G., Müller, T. & Meyer, R. L. (2014). Single-cell force spectroscopy of bacteria enabled by naturally derived proteins. Langmuir, 30(14), 4019-25. https://doi.org/10.1021/la404673q

Hildebrandt, L., Preus, S., Zhang, Z., Voigt, N. V., Gothelf, K. V. & Birkedal, V. (2014). Single Molecule FRET Analysis of the 11 Discrete Steps of a DNA Actuator. Journal of the American Chemical Society, 136(25), 8957-8962. https://doi.org/10.1021/ja502580t

Rosen, C. B., Rodriguez-Larrea, D. & Bayley, H. (2014). Single-molecule site-specific detection of protein phosphorylation with a nanopore. Nature Biotechnology, 32(2), 179-181. https://doi.org/10.1038/nbt.2799

Lo Presti, L., Orlando, A. M., Loconte, L., Destro, R., Ortoleva, E., Soave, R. & Gatti, C. (2014). Single N-C bond becomes shorter than a formally double N=C bond in a thiazete-1,1-dioxide crystal: An experimental and theoretical study of strong crystal field effects. Crystal Growth & Design, 14(9), 4418-4429. https://doi.org/10.1021/cg500518a

Blazquez-Castro, A., Breitenbach, T. & Ogilby, P. R. (2014). Singlet Oxygen and ROS in a New Light: Low-Dose Subcellular Photodynamic Treatment Enhnaces Proliferation at the Single Cell Level. Photochemical & Photobiological Sciences, 13(9), 1235-1240. https://doi.org/10.1039/c4pp00113c

Tørring, T., Helmig, S. W., Ogilby, P. R. & Gothelf, K. V. (2014). Singlet Oxygen in DNA Nanotechnology. Accounts of Chemical Research, 47(6), 1799-1806. https://doi.org/10.1021/ar500034y

Mikkelsen, K., Imparato, A. & Torcini, A. (2014). Sisyphus effect in pulse-coupled excitatory neural networks with spike-timing-dependent plasticity. Physical Review E, 89(6), Article 062701. https://doi.org/10.1103/PhysRevE.89.062701

Gittel, A., Barta, J., Kohoutova, I., Schnecker, J., Wild, B., Capek, P., Kaiser, C., Torsvik, V., Richter, A., Schleper, C. & Urich, T. (2014). Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland. Frontiers in Microbiology, 5(October), Article 541. https://doi.org/10.3389/fmicb.2014.00541

T. Koldste, G., Blank, B., J. G. Borge, M., A. Briz, J., Carmona-Gallardo, M., M. Fraile, L., O. U. Fynbo, H., Giovinazzo, J., Johansen, J. S., Jokinen, A., Jonson, B., Kurturkian-Nieto, T., Nilsson, T., Perea, A., Pesudo, V., Picado, E., Riisager, K., Saastamoinen, A., Tengblad, O. ... Van de Walle, J. (2014). Sizeable beta-strength in ³¹Ar (beta 3p) decay. Physics Letters B, 737, 383-387. https://doi.org/10.1016/j.physletb.2014.09.015

Andersen, H. L., Jensen, K. M. Ø., Tyrsted, C., Bøjesen, E. D. & Christensen, M. (2014). Size and Size Distribution Control of Magnetic γ-Fe2O3 Nanoparticles. Poster session presented at 12th iNANO Annual Meeting, Aarhus, Denmark.

Andersen, H. L., Jensen, K. M. O., Tyrsted, C., Bojesen, E. D. & Christensen, M. (2014). Size and Size Distribution Control of γ-Fe₂O₃ Nanocrystallites: An in Situ Study. Crystal Growth & Design, 14(3), 1307-1313. https://doi.org/10.1021/cg401815a

Bækhøj, J. E., Tolstikhin, O. I. & Madsen, L. B. (2014). ‘Slow’ time discretization: a versatile time propagator for the time-dependent Schrödinger equation. Journal of Physics B: Atomic, Molecular and Optical Physics, 47(7), Article 075007. https://doi.org/10.1088/0953-4075/47/7/075007

Tubbenhauer, D. (2014). sl₃-web bases, intermediate crystal bases and categorification. Journal of Algebraic Combinatorics, 40(4), 1001-1076. https://doi.org/10.1007/s10801-014-0518-5

Tubbenhauer, D. (2014). sl_n-webs, categorification and Khovanov-Rozansky homologies. arxiv.org. http://arxiv.org/abs/1404.5752

Holt, D. B. (2014). Small RNAs involved in bacterial root symbiosis in Lotus japonicus.

Takáts, K., Pumo, M. L., Elias-Rosa, N., Pastorello, A., Pignata, G., Paillas, E., Zampieri, L., Anderson, J. P., Vinkó, J., Benetti, S., Botticella, M.-T., Bufano, F., Campillay, A., Cartier, R., Ergon, M., Folatelli, G., Foley, R. J., Förster, F., Hamuy, M. ... Reichart, D. (2014). SN 2009N: Linking normal and subluminous type II-P SNe. Royal Astronomical Society. Monthly Notices, 438(1), 368-387. https://doi.org/10.1093/mnras/stt2203

Bufano, F., Pignata, G., Bersten, M., Mazzali, P. A., Ryder, S. D., Margutti, R., Milisavljevic, D., Morelli, L., Benetti, S., Cappellaro, E., Gonzalez-Gaitan, S., Romero-Cañizales, C., Stritzinger, M., Walker, E. S., Anderson, J. P., Contreras, C., de Jaeger, T., Förster, F., Gutierrez, C. ... Soderberg, A. (2014). SN 2011hs: A fast and faint type IIb supernova from a supergiant progenitor. Royal Astronomical Society. Monthly Notices, 439(2), 1807-1828. https://doi.org/10.1093/mnras/stu065

Schmid, M. & Jensen, T. H. (2014). SnapShot: nuclear RNAPII transcript modification. Cell, 157(5), 1244-1244.e1-2. https://doi.org/10.1016/j.cell.2014.05.003

Bienau, M. J., Hattermann, D., Kröncke, M., Kretz, L., Otte, A., Eiserhardt, W. L., Milbau, A., Graae, B. J., Durka, W. & Eckstein, R. L. (2014). Snow cover consistently affects growth and reproduction of Empetrum hermaphroditum across latitudinal and local climatic gradients. Alpine Botany, 124(2), 115-129. https://doi.org/10.1007/s00035-014-0137-8

Lindgreen, S., Krogh, A. & Pedersen, J. S. (2014). SNPest: a probabilistic graphical model for estimating genotypes. BMC Research Notes, 7, 698. https://doi.org/10.1186/1756-0500-7-698

Haug, A. & Busch, J. (2014). Socially responsible design or ‘Bear Favours’. In E. Bohemia, A. Rieple, J. Liedtka & R. Cooper (Eds.), Proceedings of the 19th DMI: Academic Design Management Conference (pp. 1561-1578) http://www.scribd.com/doc/238251719/The-19th-DMI-International-Design-Management-Research-Conference

Filos-Ratsikas, A., Frederiksen, S. K. S. & Zhang, J. (2014). Social welfare in one-sided matchings: Random priority and beyond. In R. Lavi (Ed.), Algorithmic Game Theory: 7th International Symposium, SAGT 2014, Proceedings (pp. 1-12). Springer VS. https://doi.org/10.1007/978-3-662-44803-8_1

Greve, M. H., Adhikari, K., de Jonge, L. W., Greve, M. B., Chellasamy, M. & Kristiansen, S. M. (2014). Soil Organic Carbon Stock in a South Greenland Area. Abstract from The 6th Global Workshop on Digital Soil Mapping, Nanjing, China.

Ogric, M., Kristiansen, S. M., Adhikari, K. & Greve, M. H. (2014). Soil organic carbon stock in southern Greenland assessed following the Globalsoilmap.net specifications. Abstract from 4th Slovenian geological meeting, Ankaran, Slovenia.

Shen, Y., Søndergaard, M., Christensen, M., Birgisson, S. & Iversen, B. B. (2014). Solid State Formation Mechanism of Li₄Ti₅O₁₂ from an Anatase TiO₂ Source. Chemistry of Materials, 26(12), 3679-3686. https://doi.org/10.1021/cm500934z

Bondesgaard, M., Mamakhel, M. A. H., Hald, P., Becker, J. & Iversen, B. B. (2014). Solvothermal flow synthesis and PXRD study of the Pt_1-xRu_x system. Poster session presented at 43rd Danish Crystallographers Meeting & 6th DanScatt Meeting, Lyngby, Denmark.

Bondesgaard, M., Mamakhel, M. A. H., Hald, P., Becker, J. & Iversen, B. B. (2014). Solvothermal flow synthesis and PXRD study of the Pt_1-xRu_x system. Poster session presented at EPDIC14, The European Powder Diffraction Conference, Aarhus, Denmark.

Glerup, S., Olsen, D., Vægter, C. B., Gustafsen, C., Sjøgaard, S., Hermey, G., Kjølby, M. F., Jensen, S. M., Ulrichsen, M., Hansen, S. B., Skeldal, S., Fjorback, A. N., Nyengaard, J. R., Jacobsen, J., Bender, D., Bjarkam, C. R., Sørensen, E. S., Füchtbauer, E.-M., Eichele, G. ... Nykjær, A. (2014). SorCS2 Regulates Dopaminergic Wiring and Is Processed into an Apoptotic Two-Chain Receptor in Peripheral Glia. Neuron, 82(5), 1074–1087. https://doi.org/10.1016/j.neuron.2014.04.022

Montigny, C., Decottignies, P., le Maréchal, P., Capy, P., Bublitz, M., Olesen, C., Møller, J. V., le Maire, M. & Nissen, P. (2014). S-Palmitoylation and S-Oleoylation of Rabbit and Pig Sarcolipin. Journal of Biological Chemistry, 289, 33850-33861. https://doi.org/10.1074/jbc.M114.590307

Madsen, M. & Møller, A. (2014). Sparse Dataflow Analysis with Pointers and Reachability. In M. Müller-Olm & H. Seidl (Eds.), Static Analysis: 21st International Symposium, SAS 2014, Munich, Germany, September 11-13, 2014. Proceedings (pp. 201-218). Springer VS. https://doi.org/10.1007/978-3-319-10936-7_13

Rasmussen, T., Thomsen, E., Skirbekk, K., Slubowska-Woldengen, M., Klitgaard-Kristensen, D. & Koc, N. (2014). Spatial and temporal distribution of Holocene temperature maxima in the northern Nordic seas: interplay of Atlantic-, Arctic- and polar water masses. Quaternary Science Reviews, 92(SI), 280-291. https://doi.org/10.1016/j.quascirev.2013.10.034

Koch, B. E. V., Stougaard, J. & Spaink, H. P. (2014). Spatial and temporal expression patterns of chitinase genes in developing zebrafish embryos. Gene Expression Patterns, 14(2), 69-77. https://doi.org/10.1016/j.gep.2014.01.001

Sidlauskas, D. & Jensen, C. S. (2014). Spatial joins in main memory: Implementation matters! Proceedings of the VLDB Endowment, 8(1), 97-100. http://www.vldb.org/pvldb/vol8/p97-sidlauskas.pdf

Miclaus, T., Bochenkov, V., Ogaki, R., Howard, K. & Sutherland, D. S. (2014). Spatial Mapping and Quantification of Soft and Hard Protein Coronas at Silver Nanocubes. Nano Letters, 14(4), 2086-2093. https://doi.org/10.1021/nl500277c

Birkhofer, K., Bird, T., Bilde, T. & Lubin, Y. (2014). Spatial patterns of social spider colonies in Namibia reflect habitat features and dispersal modes. Transactions of the Royal Society of South Africa, 69(3), 157-163. https://doi.org/10.1080/0035919X.2014.941044

Dupont, Y. L., Nielsen, K. T., Hagen, M., Henriksen, M. V., Olesen, J. M., Pedersen, N. M. E. & Kissling, W. D. (2014). Spatial structure of an individual-based plant–pollinator network. Oikos, 123(11), 1301–1310. https://doi.org/10.1111/oik.01426

Voutchkova, D., Ernstsen, V., Kristiansen, S. M. & Hansen, B. (2014). Spatial variability of drinking water iodine in Denmark: implications for future policy making. Poster session presented at EGU General Assembly 2014, Vienna, Austria.

Nielsen, K. T. (2014). Spatio-temporal dynamics of ecological networks. Aarhus University. Department of Bioscience.

Odgaard, M. V. (2014). Spatiotemporal landscape dynamics of agricultural and forested areas in Denmark. Aarhus Universitet, Institut for Agroøkologi.

Lund, F. W., Jensen, M. L. V., Christensen, T., Nielsen, G. K., Heegaard, C. W. & Wüstner, D. (2014). SpatTrack: An Imaging Toolbox for Analysis of Vesicle Motility and Distribution in Living Cells. Traffic, 15(12), 1406-1429. https://doi.org/10.1111/tra.12228

Jacobsen, L. M. W., Pujolar, J. M., Gilbert, M. T. P., Moreno-Mayar, J. V., Bernatchez, L., Als, T. D., Lobon-Cervia, J. & Hansen, M. M. (2014). Speciation and demographic history of Atlantic eels (Anguilla anguilla and A. rostrata) revealed by mitogenome sequencing. Heredity, 113, 432-442. https://doi.org/10.1038/hdy.2014.44

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