Publications

Follow the latest publications from the Faculty of Natural Sciences.

Sükösd, Z., Knudsen, B., Kjems, J. & Pedersen, C. N. S. (2012). PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data. Bioinformatics, 28(20), 2691-2692. https://doi.org/10.1093/bioinformatics/bts488

Fujiwara, Y., A. Dixon, J., O’Hara, F., Funder, E. D., D. Dixon, D., A. Rodriguez, R., D. Baxter, R., Herlé, B., Sach, N., R. Collins, M., Ishihara, Y. & S. Baran, P. (2012). Practical and innate carbon–hydrogen functionalization of heterocycles. Nature, 492(7427), 95-99. https://doi.org/10.1038/nature11680

Faust, S., Pietrzak, K. & Schipper, J. (2012). Practical Leakage-Resilient Symmetric Cryptography. Lecture Notes in Computer Science, 7428, 213-232 . https://doi.org/10.1007/978-3-642-33027-8_13

Roger, T., Büscher, J., Bastin, B., Kirsebom, O. S., Raabe, R., Alcorta, M., Äystö, J., Borge, M. J. G., Carmona-Gallardo, M., Cocolios, T. E., Cruz, J., Dendooven, P., Fraile, L. M., Fynbo, H. O. U., Galaviz, D., Gasques, L. R., Giri, G. S., Huyse, M., Hyldegaard, S. ... Wilschut, H. W. (2012). Precise Determination of the Unperturbed ⁸B Neutrino Spectrum. Physical Review Letters, 108(16), 162502. https://doi.org/10.1103/PhysRevLett.108.162502

Yong, D., Grundahl, F., Meléndez, J. & Norris, J. E. (2012). Precision Chemical Abundance Measurements. Proceedings of the International Astronomical Union, 10, 237-238. https://doi.org/10.1017/S1743921314005572

Mazzocchi, C., Janas, Z., Ba̧czyk, P., Fynbo, H. O. U. & Köster, U. (2012). Precision half-life measurement of ⁷Be implanted in different materials. Acta Physica Polonica B, 43(2), 279-284. https://doi.org/10.5506/APhysPolB.43.279

Lomstein, B. A. & Jørgensen, B. B. (2012). Pre-column liquid chromatographic determination of dipicolinic acid from bacterial endospores. Limnology and Oceanography, 10, 227-233. https://doi.org/10.4319/lom.2012.10.227

Sandom, C. J., Sandel, B. S., Dalby, L., Kissling, W. D., Nielsen, K. T., Fløjgaard, C., Lenoir, J., Ejrnæs, R. & Svenning, J.-C. (2012). Predator-prey interactions as macro-scale drivers of species diversity in mammals. Abstract from Ecological Society of America, 97th Annual Meeting, Portland, United States. http://eco.confex.com/eco/2012/webprogram/Paper37320.html

te Pas, M. F. W., Lebret, B., Damon, M., Thomsen, B., Pierzchala, M., Korwin-Kassakowska, A., Li, K., Kristensen, L., Young, J. F., Pedersen, B. & Oksbjerg, N. (2012). Predicting meat quality with biomarkers. Fleischwirtschaft International, 27, 18-22.

Smith, C. N., Assous, S., Chok, H. & Friis, H. (2012). Predicting Rock Properties of Hydrocarbon Reservoirs from Bulk Elemental Geochemistry. Abstract from AAPG Annual Convention and Exhibition, Long Beach, California, United States. http://www.searchanddiscovery.com/documents/2012/40988smith/ndx_smith.pdf

Herrmann, R. (2012). Prediction of the Response Behaviour of One-Hit Detectors in Particle Beams.

Midtgaard, J. & Might, M. (2012). Preface. Elsevier. https://doi.org/10.1016/j.entcs.2012.09.001

Schiffer, C., Jacobsen, B. H., Balling, N. & Nielsen, S. B. (2012). Preliminary results of a geophysical study of the East Greenland Caledonides: Receiver Functions map crustal architecture. Poster session presented at DGG Meeting 2012, Hamburg, Germany.

Bødker, S. & Klokmose, C. N. (2012). Preparing Students for (Inter-)Action with Activity Theory. International Journal of Design, 6(3), 99-111. http://www.ijdesign.org/ojs/index.php/IJDesign/article/viewFile/972/532

Triviño, A., Uytterhoeven, K., Grundahl, F. & Pallé, P. L. (2012). Presentation of the reduction pipeline of the SONG échelle spectrograph. Astronomische Nachrichten, 333(10), 1107-1109. https://doi.org/10.1002/asna.201211797

Nilsson, L., Andersen, M., Bjerre, J., Balog, R., Hammer, B., Hornekær, L. & Stensgaard, I. (2012). Preservation of the Pt(100) surface reconstruction after growth of a continuous layer of graphene. Surface Science, 606(3-4), 464–469. https://doi.org/10.1016/j.susc.2011.11.007

Tjellden, A. K. E., Kristiansen, S. M. & Botfeldt, K. B. (2012). Preservation status and priorities for in situ monitoring of the weapon sacrifice in Illerup Ådal, Denmark. Conservation and Management of Archaeological Sites, 14(1-4), 150-158. https://doi.org/10.1179/1350503312Z.00000000012

Lapham, L., Wilson, R. & Chanton, J. (2012). Pressurized laboratory experiments show no stable carbon isotope fractionation of methane during gas hydrate dissolution and dissociation. Rapid Communications in Mass Spectrometry, 26(1), 32-36.

Heisterberg, M. V., Laurberg, G., Veien, N. K., Menné, T., Avnstorp, C., Kaaber, K., Andersen, K. E., Sommerlund, M., Danielsen, A. G. M., Andersen, B. L., Kristensen, B., Kristensen, A. O., Nielsen, N. H., Thormann, J., Vissing, S. & Johansen, J. D. (2012). Prevalence of allergic contact dermatitis caused by hydroxyisohexyl 3-cyclohexene carboxaldehyde has not changed in Denmark. Contact Dermatitis. Supplement, 67(1), 49-51. https://doi.org/10.1111/j.1600-0536.2012.02125.x

Hall, S. J. G., Lenstra, J. A., Deeming, D. C., The European Cattle Genetic Diversity Consortium & Holm, L.-E. (2012). Prioritization based on neutral genetic diversity may fail to conserve important characteristics in cattle breeds. Journal of Animal Breeding and Genetics, 129(3), 218-225. https://doi.org/10.1111/j.1439-0388.2011.00949.x

Nissim, K., Orlandi, C. & Smorodinsky, R. (2012). Privacy-aware mechanism design. In B. Faltings (Ed.), Proceedings of the ACM Conference on Electronic Commerce, EC '12 (pp. 774-789). Association for Computing Machinery. https://doi.org/10.1145/2229012.2229073

Nielsen, L. M., Hoffmann, S. V. & Nielsen, S. B. (2012). Probing electronic coupling between adenine bases in RNA strands from synchrotron radiation circular dichroism experiments. Chemical Communications, 48, 10425–10427. https://doi.org/10.1039/c2cc35201j

Keller, A. C., Bald, I., Rotaru, A., Cauët, E., Gothelf, K. V. & Besenbacher, F. (2012). Probing Electron-Induced Bond Cleavage at the Single-Molecule Level Using DNA Origami Templates. A C S Nano, 6(5), 4392-4399. https://doi.org/10.1021/nn3010747

Toker, J., Svendsen, A., Bochenkova, A. & Andersen, L. H. (2012). Probing the Barrier for Internal Rotation of the Retinal Chromophore†. Angewandte Chemie, 51(35), 8757-8761. https://doi.org/10.1002/anie.201203746

Lloyd, K., Schreiber, L., Petersen, D. G., Richter, M., Kjeldsen, K. U., Lever, M., Lenk, S., Kleindienst, S., Schramm, A. & Jørgensen, B. B. (2012). Probing the genomic content of low-energy specialists. Abstract from MICROENERGY 2012 2nd International Workshop on Microbial Life under Extreme Energy Limitation, Aarhus , Denmark.

N. Pfeiffer, A., Cirelli, C., S. Landsman, A., Smolarski, M., Dimitrovski, D., B. Madsen, L. & Keller, U. (2012). Probing the longitudinal momentum spread of the electron wave packet at the tunnel exit. Physical Review Letters, 109(8), 083002. https://doi.org/10.1103/PhysRevLett.109.083002

Rittman, M., Hoffmann, S. V., Gilroy, E., Hicks, M. R., Finkenstadt, B. & Rodger, A. (2012). Probing the structure of long DNA molecules in solution using synchrotron radiation linear dichroism. Physical Chemistry Chemical Physics, 14, 353-366. https://doi.org/10.1039/C1CP22371B

Alexanderson, H. & Murray, A. S. (2012). Problems and potential of OSL dating Weichselian and Holocene sediments in Sweden. Quaternary Science Reviews, 44, 37-50. https://doi.org/10.1016/j.quascirev.2009.09.020

Midtgaard, J. & Might, M. (Eds.) (2012). Proceedings of the Fourth International Workshop on Numerical and Symbolic Abstract Domains, NSAD 2012. Elsevier. https://doi.org/10.1016/j.entcs.2012.09.001

Jensen, R. L. (2012). Production and Removal of Singlet Oxygen in Biologically Pertinent Systems.

Miroshnychenko, Y., Nielsen, O., Thorsen, A. & Drewsen, M. (2012). Profiling of micrometer-sized laser beams in restricted volumes. Applied Optics, 51(13), 2341-2345. https://doi.org/10.1364/AO.51.002341

Adhikari, K., Bou Kheir, R., Greve, M. H., Bøcher, P. K., Greve, M. B., Malone, B. P., Minasny, B. & McBratney, A. B. (2012). Progress towards GlobalSoilMap.net soil database of Denmark. In A. B. McBratney (Ed.), Digital Soil Assessments and Beyond: Proceedings of the 5th Global Workshop on Digital Soil Mapping 2012, Sydney, Australia (pp. 445-451). CRC Press. https://doi.org/10.1201/b12728-87

Andersen, P. K., Lykke-Andersen, S. & Jensen, T. H. (2012). Promoter proximal polyadenylation sites reduce transcription activity. Genes & Development, 26, 2169-2179. https://doi.org/10.1101/gad.189126.112

Su, R., Tiruvalam, R., He, Q., Dimitratos, N., Kesavan, L., Hammond, C., Antonio Lopez-Sanchez, J., Bechstein, R., Kiely, C., Hutchings, G. & Besenbacher, F. (2012). Promotion of Phenol Photodecomposition over TiO2 Using Au, Pd, and AuPd Nanoparticles. A C S Nano, 6(7), 6284-6292. https://doi.org/10.1021/nn301718v

Alcorta, M., Borge, M. J. G., Cubero, M., Diget, C. A., Domínguez-Reyes, R., Fraile, L. M., Fulton, B. R., Fynbo, H. O. U., Galaviz, D., Hyldegaard, S., Jeppesen, H., Jonson, B., Kirsebom, O. S., Madurga, M., Maira, A., Muñoz-Martín, A., Nilsson, T., Nyman, G., Obradors, D. ... Turrion, M. (2012). Properties of 12C resonances determined from the 10B(3He, pααα) and 11B(3He,dααα) reactions studied in complete kinematics. Physical Review C (Nuclear Physics), 86(6), 064306-1-064306-6. https://doi.org/10.1103/PhysRevC.86.064306

Van Eylen, V., Kjeldsen, H., Christensen-Dalsgaard, J. & Aerts, C. (2012). Properties of extrasolar planets and their host stars: A case study of HAT-P-7. Astronomische Nachrichten, 333(10), 1088-1091. https://doi.org/10.1002/asna.201211832

Blais, E., Brody, J. E. & Matulef, K. (2012). Property Testing Lower Bounds via Communication Complexity. Computational Complexity, 21(2), 311-358 . https://doi.org/10.1007/s00037-012-0040-x

Kousted, T. M., Jensen, J. K., Gao, S. & Andreasen, P. (2012). Protease Nexin-1 – a Serpin with a Possible Proinvasive Role in Cancer. In N. Behrendt (Ed.), Matrix Proteases in Health and Disease (pp. 251-281). Wiley-VCH. https://doi.org/10.1002/9783527649327.ch10

Angelov, B., Angelova, A., Papahadjopoulos-Sternberg, B., Hoffmann, S. V., Nicolas, V. & Lesieur, S. (2012). Protein-Containing PEGylated Cubosomic Particles: Freeze-Fracture Electron Microscopy and Synchrotron Radiation Circular Dichroism Study. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 116(26), 7676-7686. https://doi.org/10.1021/jp303863q

Poulsen, H., Nissen, P., Mouritsen, O. G. & Khandelia, H. (2012). Protein kinase A (PKA) phosphorylation of Na+/K+-ATPase opens intracellular C-terminal water pathway leading to third Na+-binding site in molecular dynamics simulations. Journal of Biological Chemistry, 287(19), 15959-15965. https://doi.org/10.1074/jbc.M112.340406

Pedersen, L. R. L., Hansted, J. G., Nielsen, S. B., Petersen, T. E., Sørensen, U. S., Otzen, D. & Sørensen, E. S. (2012). Proteolytic activation of proteose peptone component 3 by release of a C-terminal peptide with antibacterial properties. Journal of Dairy Science, 95(6), 2819-2829. https://doi.org/10.3168/jds.2011-4837

Dyrlund, T. F. (2012). Proteomics and Data Mining: Study of the human cornea proteome and the human embryo secretome.

Jensen, H. B., Poulsen, N. A., Holland, J. W., Andersen, K. K., Gregersen, V. R., Bertelsen, H. P., Bendixen, C. & Larsen, L. B. (2012). Proteomic study of bovine β-casein. Poster session presented at 8th Annual Symposium on Milk Genomics and Human Health, Melbourne, Australia.

Ahnfelt-Rønne, J., Jørgensen, MC., Jensen, JN., Füchtbauer, E.-M., Deering, T., MacDonald, RJ., Wright, CV., Madsen, O. D. & Serup, P. (2012). Ptf1a-mediated control of Dll1 reveals an alternative to the lateral inhibition mechanism. Developement, 139(1), 33.

Sitsel, O., Dach, I. & Hoffmann, R. D. (2012). Pumping life. Biozoom, 2012(2), 7-14. http://www.biokemi.org/biozoom/issues/531/articles/2433

Thomsen, K. (2012). Pure infiniteness of the crossed product of an AH-algebra by an endomorphism. Canadian Journal of Mathematics - Journal Canadien de Mathématiques, 64(3), 705-720. https://doi.org/10.4153/CJM-2011-081-4

Hein, K. L., Nissen, P. & Morth, J. P. (2012). Purification, crystallization and preliminary crystallographic studies of a PacL homologue from Listeria monocytogenes. Acta Crystallographica. Section F: Structural Biology and Crystallization Communications Online, 68(Part 4), 424-427. https://doi.org/10.1107/S1744309112004046

Kjeldsen, K. U., Bataillon, T., Pinel, N., De Mita, S., Lund, M. B., Panitz, F., Bendixen, C., Stahl, D. A. & Schramm, A. (2012). Purifying selection and molecular adaptation in the genome of Verminephrobacter, the heritable symbiotic bacteria of earthworms. Genome Biology and Evolution, 4(3), 307-315. https://doi.org/10.1093/gbe/evs014

Knudsen, H. & Nielsen, H. (2012). Pursuing common cultural ideals: Niels Bohr, neutrality, and international scientific collaboration during the inter-war period. In R. Lettervall, G. Somsen & S. Widmalm (Eds.), Neutrality in Twentieth century Europe: Intersections of Science, Culture and Politics after the First World War (pp. 115-139). Routledge.

Schmøkel, M. S., Larsen, F. K., Overgaard, J., Bjerg, L., Cenedese, S., Jørgensen, M. R. V., Christensen, M. & Iversen, B. B. (2012). Pushing X-ray charge densities to the limit: Comparative study of CoSb3. Poster session presented at European Charge Density Meeting VI, Štrbské pleso, Slovakia.

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