Publications

Follow the latest publications from the Faculty of Natural Sciences.

J.E., P., Auken, E., Schamper, C. N. C., Christiansen, A. V., Kalscheuer, T. & Green, A. G. (2013). Processing and inversion of commercial helicopter time-domain electromagnetic data for environmental assessments and geologic and hydrologic mapping. Geophysics, 78, E149-E159. https://doi.org/10.1190/GEO2012-0452.1

Pedersen, P. L., Gajdacz, M., Winter, N., Hilliard, A., Sherson, J. & Arlt, J. (2013). Production and manipulation of wave packets from ultracold atoms in an optical lattice. Physical Review A, 88(2), Article 023620. https://doi.org/10.1103/PhysRevA.88.023620

Virtanen, R., Grytnes, J.-A., Lenoir, J., Luoto, M., Oksanen, J., Oksanen, L. & Svenning, J.-C. (2013). Productivity-diversity patterns in arctic tundra vegetation. Ecography, 36(3), 331-341. https://doi.org/10.1111/j.1600-0587.2012.07903.x

Kragh, H. (2013). Professor Röntgens usynlige stråler. In 50 Opdagelser: Højdepunkter i Naturvidenskaben (pp. 163-170). Aarhus Universitetsforlag.

Saleh, G., Soave, R., Lo Presti, L. & Destro, R. (2013). Progress in the understanding of the key pharmacophoric features of the antimalarial drug dihydroartemisinin: An experimental and theoretical charge density study. Chemistry - A European Journal, 19(10), 3490-3503. https://doi.org/10.1002/chem.201202486

Cohen, S. I. A., Linse, S., Luheshi, L. M., Hellstrand, E., White, D. A., Rajah, L., Otzen, D., Vendruscolo, M., Dobson, C. M. & Knowles, T. P. J. (2013). Proliferation of amyloid-β42 aggregates occurs through a secondary nucleation mechanism. Proceedings of the National Academy of Sciences (PNAS), 110(24), 9758-9763. https://doi.org/10.1073/pnas.1218402110

Puech, M. (2013). Proofs, Upside Down. In Programming Languages and Systems: 11th Asian Symposium, APLAS 2013, Melbourne, VIC, Australia, December 9-11, 2013. Proceedings (pp. 365-380 ). Springer VS. https://doi.org/10.1007/978-3-319-03542-0_26

Benomar, O., Bedding, T. R., Mosser, B., Stello, D., Belkacem, K., Garcia, R. A., White, T. R., Kuehn, C. A., Deheuvels, S. & Christensen-Dalsgaard, J. (2013). Properties of Oscillation Modes in Subgiant Stars Observed by Kepler. Astrophysical Journal, 767(2), 158. https://doi.org/10.1088/0004-637X/767/2/158

Afshani, P., Matulef, K. & Wilkinson, B. T. (2013). Property Testing on Linked Lists. Electronic Colloquium on Computational Complexity, TR13-187. http://www.informatik.uni-trier.de/~ley/db/journals/eccc/eccc20.html

Horan, K. A., Hansen, K., Jakobsen, M. R., Holm, C. K., Søby, S., Unterholzner, L., Thompson, M., West, J. A., Iversen, M. B., Rasmussen, S. B., Ellermann-Eriksen, S., Kurt-Jones, E., Landolfo, S., Damania, B., Melchjorsen, J., Bowie, A. G., Fitzgerald, K. A. & Paludan, S. R. (2013). Proteasomal Degradation of Herpes Simplex Virus Capsids in Macrophages Releases DNA to the Cytosol for Recognition by DNA Sensors. Journal of Immunology, 190(5), 2311-2329. https://doi.org/10.4049/jimmunol.1202749

Petersen, K. K., Hørlyck, A., Østergaard, K. H., Andresen, J., Brøgger, T. H., Jensen, N. S., Telinius, N., Laher, I., Bertelsen, M. F., Grøndahl, C., Smerup, M. H., Secher, N. H., Brøndum, E., Hasenkam, J. M., Wang, T., Baandrup, U. & Aalkjaer, C. (2013). Protection against high intravascular pressure in giraffe legs. American Journal of Physiology: Regulatory, Integrative and Comparative Physiology, 305(9), R1021-30. https://doi.org/10.1152/ajpregu.00025.2013

Gonzalez, B. B., Dagnæs-Hansen, F., Fenton, R. A., Gao, S., Hein, S., Dong, M., Kjems, J. & Howard, K. A. (2013). Protection and systemic translocation of siRNA following oral administration of chitosan/siRNA nanoparticles. Molecular Therapy - Nucleic Acids, 2(1), 1-8. Article e76. https://doi.org/10.1038/mtna.2013.2

Kristensen, S., Pedersen, G. A., Nejsum, L. N. & Sutherland, D. S. (2013). Protein adsorption at nanopatterned surfaces studied by QCM-D and SPR. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 117(36), 10376-10383. https://doi.org/10.1021/jp4038528

Martin, S. F., Falkenberg, H., Dyrlund, T. F., Khoudoli, G. A., Mageean, C. J. & Linding, R. (2013). PROTEINCHALLENGE: Crowd sourcing in proteomics analysis and software development. Journal of Proteomics, 88, 41-46. https://doi.org/10.1016/j.jprot.2012.11.014

Bundgaard, L., Bendixen, E., Sørensen, M. A., Petersen, L. J. & Jacobsen, S. (2013). Protein composition and inflammatory markers in equine wound fluid.

Bager, R., Johansen, J. S., Jensen, J. K., Stensballe, A., Jendroszek, A., Nielsen, L. B., Sørensen, H. P. & Andreasen, P. A. (2013). Protein Conformational Change Delayed by Steric Hindrance from an N-Linked Glycan. Journal of Molecular Biology, 425(16), 2867–2877. https://doi.org/10.1016/j.jmb.2013.05.007

Kehan, X., Dedic, E., Cob-Cantal, P., Dienemann, C., Bøggild, A., Winther, K. S., Gerdes, K. & Brodersen, D. E. (2013). Protein expression, crystallization and preliminary X-ray crystallographic analysis of the isolated Shigella flexneri VapC toxin. Acta Crystallographica Section F:Structural Biology Communications, 69(Pt 7), 762-765. https://doi.org/10.1107/S1744309113014012

Brinkmann, C. R., Thiel, S. & Otzen, D. (2013). Protein:fatty acid complexes: Biochemistry, biophysics and function. FEBS journal, 280(8), 1733–1749. https://doi.org/10.1111/febs.12204

Guerreiro, J. R., Sutherland, D. S., De Freitas, V. & Sales, M. G. (2013). Protein-polyphenol interaction on silica beads for astringency tests based on eye, photography or reflectance detection modes. Analytical Methods, 5(11), 2694-2703. https://doi.org/10.1039/C3AY26478E

Wood, K., Gallat, F.-X., Otten, R., van Heel, A. J., Lethier, M., van Eijck, L., Moulin, M., Haertlein, M., Weik, M. & Mulder, F. A. A. (2013). Protein Surface and Core Dynamics Show Concerted Hydration-Dependent Activation. Angewandte Chemie International Edition, 52(2), 665-668. https://doi.org/10.1002/anie.201205898

Vermeulen, C. J., Pedersen, K. S., Beck, H. C., Petersen, J., Gagalova, K. K. & Loeschcke, V. (2013). Proteomic Characterization of Inbreeding-Related Cold Sensitivity in Drosophila melanogaster. PLoS One, 8(5). https://doi.org/10.1371/journal.pone.0062680

Colinet, H., Overgaard, J., Com, E. & Sørensen, J. G. (2013). Proteomic profiling of thermal acclimation in Drosophila melanogaster. Insect Biochemistry and Molecular Biology, 43, 352-365.

Poulsen, E. T. (2013). Proteomics of The Human Cornea: In Health and Disease.

Shea, T., Böhme, C., Cheymol, B., Gallimore, S., Hassanzadegan, H., Pitcher, E. & Thomsen, H. D. (2013). Proton Beam Measurement Strategy for the 5 MW European Spallation Source Target. Paper presented at International Beam Instrumentation Conference 2013, Oxford, United Kingdom.

Korsgaard, H. & Brynskov, M. (2013). Prototyping a Smart City. Paper presented at International Workshop Digital Cities, Munich, Germany.

Thorup Nielsen, M., Hansen, R. W. & Friis, H. (2013). Provenance studies of Late Jurassic-Early Cretaceous gravity flows in the Danish Central Graben, North Sea. Abstract from IAS International Meeting of Sedimentologists, Manchester, United Kingdom.

Howard, K. & Peer, D. (2013). Providing the full picture: A mandate for standardizing nanoparticle-based drug delivery. Nanomedicine, 8(7), 1031-1033. https://doi.org/10.2217/NNM.13.95

Andersen, S. S., Hvid, M., Pedersen, F. S. & Deleuran, B. (2013). Proximity ligation assay combined with flow cytometry is a powerful tool for the detection of cytokine receptor dimerization. Cytokine, 64(1), 54-57. https://doi.org/10.1016/j.cyto.2013.04.026

Bogdanov, A., Dvir, Z., Verbin, E. & Yehudayoff, A. (2013). Pseudorandomness for width-2 branching programs. Theory of Computing, 9(7), 283-293. https://doi.org/10.4086/toc.2013.v009a007

Liu, X., Olsen, J., Agerbo, E., Yuan, W., Cnattingius, S., Gissler, M. & Li, J. (2013). Psychological Stress and Hospitalization for Childhood Asthma-a Nationwide Cohort Study in Two Nordic Countries. PLoS One, 8(10), Article e78816. https://doi.org/10.1371/journal.pone.0078816

Liu, D., Pedersen, C. L., Nielsen, L. P. & Feilberg, A. (2013). PTR-MS application for biofiltration kinetics assessment of odour removal. In A. Hansel & J. Dunkl (Eds.), Proceedings : Universitätszentrum Obergurgl, Austria, 3rd February - 8th February 2013 (pp. 28-31). Innsbruck University Press. http://www.uibk.ac.at/iup/buch_pdfs/ptrms_2013.pdf

Zottarel, A. (2013). Public key cryptography from weaker assumptions. Institut for Datalogi, Aarhus Universitet.

Lindballe, T. B., Kristensen, M. V. G., Berg-Sørensen, K., Keiding, S. R. & Stapelfeldt, H. (2013). Pulsed laser manipulation of an optically trapped bead: Averaging thermal noise and measuring the pulsed force amplitude. Optics Express, 21(2), 1986-1996. https://doi.org/10.1364/OE.21.001986

Eltzholtz, J. R., Tyrsted, C., Jensen, K. M. O., Bremholm, M., Christensen, M., Becker-Christensen, J. & Iversen, B. B. (2013). Pulsed supercritical synthesis of anatase TiO₂ nanoparticles in a water-isopropanol mixture studied by in situ powder X-ray diffraction. Nanoscale, 5(6), 2372-2378. https://doi.org/10.1039/c3nr33127j

Schmøkel, M. S., Bjerg, L., Overgaard, J., Larsen, F. K., Madsen, G. K. H., Sugimoto, K., Takata, M. & Iversen, B. B. (2013). Pushing X-ray Electron Densities to the Limit: Thermoelectric CoSb₃. Angewandte Chemie International Edition, 52(5), 1503-1506. https://doi.org/10.1002/anie.201206065

Farajzadeh, L. (2013). QTL Analysis and Functional Genomics of Animal Model. Aarhus University, Faculty of Science and Technology.

Gomez, F. H., Loeschcke, V. & Norry, F. M. (2013). QTL for survival to UV-C radiation in Drosophila melanogaster. International Journal of Radiation Biology, 89(7), 583-589. https://doi.org/10.3109/09553002.2012.711503

Lund, M. S., Bendixen, C., Sahana, G., Sørensen, P., Svendsen, S., Thomsen, B., Majgren, B. F., Sabry, A. M., Andersson-Eklund, I. L., Vilkki, J. H., Iso-Touru, T. K., Vitala, S. M., Schulman, N. F., Hastings, N., Williams, J. L. W., Woolliams, J. A., Avila, A. I. F., Viinalass, H. & Vårv, S. (2013). QTLs for Mastitis Resistance in Cattle. (Patent No. PCT/DK2007/000058).

Nielsen, K., Nielsen, B. L., Pontoppidan, B. & Sillasen, M. (2013). Qualifying in-service education of Science Teachers (QUEST): a Danish large-scale, long-term, collaborative TPD-project. Poster session presented at ESERA , Nicosia, Cyprus.

Pigolotti, S., Lizana, L., Otzen, D. & Sneppen, K. (2013). Quality control system response to stochastic growth of amyloid fibrils. FEBS Letters, 587(9), 1405-1410. https://doi.org/10.1016/j.febslet.2013.03.018

Lazar, P., Zhang, S., Šafářová, K., Li, Q., Froning, J. P., Granatier, J., Hobza, P., Zbořil, R., Besenbacher, F., Dong, M. & Otyepka, M. (2013). Quantification of the interaction forces between metals and graphene by quantum chemical calculations and dynamic force measurements under ambient conditions. ACS Nano, 7(2), 1646-1651. https://doi.org/10.1021/nn305608a

Arndt, S., Jørgensen, B. B., LaRowe, D. E., Middelburg, J. J., Pancost, R. D. & Regnier, P. (2013). Quantifying the degradation of organic matter in marine sediments: A review and synthesis. Earth-Science Reviews, 123, 53-86. https://doi.org/10.1016/j.earscirev.2013.02.008

The BIEN Working Group (2013). Quantifying the fundamental unit of biogeography: assessing different methods to measure geographic range size and why it matters. Poster session presented at International Biogeography Society, 6th Biennal Meeting, Miami, Florida, United States.

Anderson, J. W., Novák, A., Sükösd, Z., Golden, M., Arunapuram, P., Edvardsson, I. & Hein, J. (2013). Quantifying variances in comparative RNA secondary structure prediction. BMC Bioinformatics, 14, Article 149. https://doi.org/10.1186/1471-2105-14-149

Hansen, J. P. (2013). Quantum Codes from Toric Surfaces. I E E E Transactions on Information Theory, 59(2), 1188-1192. https://doi.org/10.1109/TIT.2012.2220523

Gammelmark, S. & Eckardt, A. (2013). Quantum crystal growing: adiabatic preparation of a bosonic antiferromagnet in the presence of a parabolic inhomogeneity. New Journal of Physics, 15, 033028. https://doi.org/10.1088/1367-2630/15/3/033028

Knudsen, B. R., Jepsen, M. L. & Ho, Y.-P. (2013). Quantum dot-based nanosensors for diagnosis via enzyme activity measurement. Expert Review of Molecular Diagnostics, 13(4), 367-375. https://doi.org/10.1586/erm.13.17

Malossi, N., Bason, M. G., Viteau, M., Arimondo, E., Mannella, R., Morsch, O. & Ciampini, D. (2013). Quantum driving protocols for a two-level system: From generalized Landau-Zener sweeps to transitionless control. Physical Review A, 87(1), 012116. https://doi.org/10.1103/PhysRevA.87.012116

Nielsen, S. E. B. (2013). Quantum Dynamics From The Density.

Julsgaard, B., Grezes, C., Bertet, P. & Mølmer, K. (2013). Quantum Memory for Microwave Photons in an Inhomogeneously Broadened Spin Ensemble. Physical Review Letters, 110(25), 250503. https://doi.org/10.1103/PhysRevLett.110.250503

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