Publications

Follow the latest publications from the Faculty of Natural Sciences.

Labouriau, R. (2020). On the Bias of the Score Function of Finite Mixture Models. ArXiv.

Jones, N. C., Nielsen, S. B. & Hoffmann, S. V. (2020). On the delocalization length in RNA single strands of cytosine: how many bases see the light? Physical Chemistry Chemical Physics, 22(4), 2188-2192. https://doi.org/10.1039/c9cp05292e

Smialek, M. A., Duflot, D., Jones, N. C., Hoffmann, S. V., Zuin, L., Macdonald, M., Mason, N. J. & Limao-Vieira, P. (2020). On the electronic structure of methyl butyrate and methyl valerate. European Physical Journal D, 74(7), Article 153. https://doi.org/10.1140/epjd/e2020-10125-5

Marqvorsen, M. H. S., Brinkø, A. & Jensen, H. H. (2020). On the electron withdrawing nature of ethers in glycosylation chemistry. Carbohydrate Research, 487, Article 107886. https://doi.org/10.1016/j.carres.2019.107886

Murphy, S. J., Saio, H., Takada-Hidai, M., Kurtz, D. W., Shibahashi, H., Takata, M. & Hey, D. R. (2020). On the first δSct-roAp hybrid pulsator and the stability of p and g modes in chemically peculiar A/F stars. Monthly Notices of the Royal Astronomical Society, 498(3), 4272-4286. https://doi.org/10.1093/mnras/staa2667

C. Faria, G., Duong, D. T., Da Cunha, G. P., Selter, P., Strassø, L. A., Davidson, E. C., Segalman, R. A., Hansen, M. R., Deazevedo, E. R. & Salleo, A. (2020). On the growth, structure and dynamics of P3EHT crystals. Journal of Materials Chemistry C, 8(24), 8155-8170. https://doi.org/10.1039/d0tc00704h

Bellot, S., Bayton, R. P., Couvreur, T. L. P., Dodsworth, S., Eiserhardt, W. L., Guignard, M. S., Pritchard, H. W., Roberts, L., Toorop, P. E. & Baker, W. J. (2020). On the origin of giant seeds: the macroevolution of the double coconut (Lodoicea maldivica) and its relatives (Borasseae, Arecaceae). New Phytologist, 228(3), 1134-1148. https://doi.org/10.1111/nph.16750

Bjørnskov, F. S. & Poulsen, T. B. (2020). On the origin of the blind chicken molecule. Nature Chemistry, 12(1), 2-3. https://doi.org/10.1038/s41557-019-0390-y

Logins, A., Li, Y. & Karras, P. (2020). On the Robustness of Cascade Diffusion under Node Attacks. In The Web Conference 2020 - Proceedings of the World Wide Web Conference, WWW 2020: Proceedings of the Web Conference 2020 (pp. 2711–2717). Association for Computing Machinery. https://doi.org/10.1145/3366423.3380028

Freksen, C. B. & Larsen, K. G. (2020). On Using Toeplitz and Circulant Matrices for Johnson–Lindenstrauss Transforms. Algorithmica, 82(2), 338-354. https://doi.org/10.1007/s00453-019-00644-y

Jørgensen, L. R., Zeuthen, C. M., Borup, K. A., Roelsgaard, M., Broge, N. L. N., Beyer, J. & Iversen, B. B. (2020). Operando X-ray scattering study of thermoelectric β-Zn₄Sb₃. IUCrJ, 7(Part 1), 100-104. https://doi.org/10.1107/S205225251901580X

Claudi, R., Biondi, F., Elias-Rosa, N., Genoni, M., Munari, M., Radhakrishnan, K., Ricci, D., Zanmar Sanchez, R., Campana, S., Schipani, P., Aliverti, M., Baruffolo, A., Ben-Ami, S., Brucalassi, A., Capasso, G., Cosentino, R., D'Alessio, F., D'Avanzo, P., Hershko, O. ... Perez Ventura, H. (2020). Operational modes and efficiency of SOXS. In C. J. Evans, J. J. Bryant & K. Motohara (Eds.), Ground-Based and Airborne Instrumentation for Astronomy VIII Article 114477C SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2562321

Nyemann, J. S., Martinez Turtos, R., Julsgaard, B., Muren, L. & Balling, P. (2020). Optical characterization of LiF:Mg,Cu,P – Towards 3D optically stimulated luminescence dosimetry. Radiation Measurements, 138, Article 106390. https://doi.org/10.1016/j.radmeas.2020.106390

Chatterjee, K., Goharshady, A. K., Ibsen-Jensen, R. & Pavlogiannis, A. (2020). Optimal and Perfectly Parallel Algorithms for On-demand Data-Flow Analysis. In P. Müller (Ed.), Programming Languages and Systems- 29th European Symposium on Programming, ESOP 2020 held as Part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2020, Proceedings (pp. 112-140). Springer. https://doi.org/10.1007/978-3-030-44914-8_5

Larsen, K. G., Mitzenmacher, M. & Tsourakakis, C. E. (2020). Optimal Learning of Joint Alignments with a Faulty Oracle. In 2020 IEEE International Symposium on Information Theory, ISIT 2020 (pp. 2492-2497). IEEE. https://doi.org/10.1109/ISIT44484.2020.9174310

Brandt, M., Orlandi, C., Shrishak, K. & Shulman, H. (2020). Optimal Transport Layer for Secure Computation. In P. Samarati, S. D. C. D. Vimercati, M. S. Obaidat & J. Ben-Othman (Eds.), ICETE 2020 - Proceedings of the 17th International Joint Conference on e-Business and Telecommunications (Vol. Volume 3: SECRYPT, pp. 130-141). SCITEPRESS Digital Library. https://doi.org/10.5220/0009826801300141

Sørensen, J. J. W. H., Nyemann, J. S., Motzoi, F., Sherson, J. & Vosegaard, T. (2020). Optimization of Pulses with Low Bandwidth for Improved Excitation of Multiple-Quantum Coherences in NMR of Quadrupolar Nuclei. Journal of Chemical Physics, 152(5), Article 054104. https://doi.org/10.1063/1.5141384

Nielsen, S. K., Carstensen, H. C., Munkholm, L. J., Nørremark, M., Rasmussen, J., Bertl, J., Labouriau, R. & Green, O. (2020). Optimized soil inversion in the headlands with a novel section-controlled mouldboard ploughing system. Soil Use and Management, 36(3), 470-481. https://doi.org/10.1111/sum.12569

Corti, V. & Bertuzzi, G. (2020). Organocatalytic Asymmetric Methodologies towards the Synthesis of Atropisomeric N-Heterocycles. Synthesis, 52(17), 2450-2468. https://doi.org/10.1055/s-0040-1707814

Bertuzzi, G., McLeod, D., Mohr, L. M. & Jørgensen, K. A. (2020). Organocatalytic Enantioselective 1,3-Dipolar [6+4] Cycloadditions of Tropone. Chemistry - A European Journal, 26(67), 15491-15496. https://doi.org/10.1002/chem.202003329

Alamdari, S., Roeters, S. J., Golbek, T. W., Schmüser, L., Weidner, T. & Pfaendtner, J. (2020). Orientation and Conformation of Proteins at the Air-Water Interface Determined from Integrative Molecular Dynamics Simulations and Sum Frequency Generation Spectroscopy. Langmuir : the ACS journal of surfaces and colloids, 36(40), 11855-11865. https://doi.org/10.1021/acs.langmuir.0c01881

Liseroudi, M. H., Ardakani, O. H., Sanei, H., Pedersen, P. K., Stern, R. A. & Wood, J. M. (2020). Origin of sulfate-rich fluids in the Early Triassic Montney Formation, Western Canadian Sedimentary Basin. Marine and Petroleum Geology, 114, Article 104236. https://doi.org/10.1016/j.marpetgeo.2020.104236

Yan, Y., Chang, C., Su, J., Venø, M. T. & Kjems, J. (2020). Osteoblastogenesis Alters Small RNA Profiles in EVs Derived from Bone Marrow Stem Cells (BMSCs) and Adipose Stem Cells (ASCs). Biomedicines, 8(10), 1-17. Article 387. https://doi.org/10.3390/biomedicines8100387

Sidenmark, L., Clarke, C., Zhang, X., Phu, J. & Gellersen, H. (2020). Outline Pursuits: Gaze-assisted Selection of Occluded Objects in Virtual Reality. In CHI 2020 - Proceedings of the 2020 CHI Conference on Human Factors in Computing Systems Article 3376438 Association for Computing Machinery. https://doi.org/10.1145/3313831.3376438

Bekalu, Z. E., Madsen, C. K., Dionisio, G., Holme, I. B., Jørgensen, L. N., Fomsgaard, I. S. & Brinch-Pedersen, H. (2020). Overexpression of nepenthesin HvNEP-1 in barley endosperm reduces fusarium head blight and mycotoxin accumulation. Agronomy, 10(2), Article 203. https://doi.org/10.3390/agronomy10020203

McLoughlin, C. K., Kotroni, E., Bregnhøj, M., Rotas, G., Vougioukalakis, G. C. & Ogilby, P. R. (2020). Oxygen- and pH-Dependent Photophysics of Fluorinated Fluorescein Derivatives: Non-Symmetrical vs. Symmetrical Fluorination. Sensors, 20(18), 1-19. Article 5172. https://doi.org/10.3390/s20185172

Storz, J. F., Natarajan, C., Grouleff, M. K., Vandewege, M., Hoffmann, F. G., You, X., Venkatesh, B. & Fago, A. (2020). Oxygenation properties of hemoglobin and the evolutionary origins of isoform multiplicity in an amphibious air-breathing fish, the blue-spotted mudskipper (Boleophthalmus pectinirostris). Journal of Experimental Biology, 223(2), Article jeb217307. https://doi.org/10.1242/jeb.217307

Bregnhøj, M., Prete, M., Turkovic, V., Petersen, A. U., Nielsen, M. B., Madsen, M. & Ogilby, P. R. (2020). Oxygen-dependent photophysics and photochemistry of prototypical compounds for organic photovoltaics: inhibiting degradation initiated by singlet oxygen at a molecular level. Methods and Applications in Fluorescence, 8(1), Article 014001. https://doi.org/10.1088/2050-6120/ab4edc

Lyons, J. A., Timcenko, M., Dieudonné, T., Lenoir, G. & Nissen, P. (2020). P4-ATPases: how an old dog learnt new tricks — structure and mechanism of lipid flippases. Current Opinion in Structural Biology, 63, 65-73. https://doi.org/10.1016/j.sbi.2020.04.001

Nielsen, K. H. (2020). På den sorte liste. Weekendavisen, Sektion 4 (Ideer), 5.

Pallesen, L. T., Gustafsen, C., Cramer, J., Petersen, S. V., Thirup, S. S., Madsen, P. & Petersen, C. M. (2020). PAK kinases targets sortilin and modulates its sorting. Molecular and Cellular Biology, 40(3), Article e00411-19. https://doi.org/10.1128/MCB.00411-19

Schulz, B. P., Vickers, M. L., Huggett, J., Madsen, H., Heilmann-Clausen, C., Friis, H. & Suess, E. (2020). Palaeogene glendonites from Denmark. Bulletin of the Geological Society of Denmark, 68, 23-35. https://doi.org/10.37570/bgsd-2020-68-03

Wild, M., Mortensen, M. F., Andreasen, N. H., Borup, P., Casati, C., Eriksen, B. V., Frost, L., Gregersen, K. M., Henriksen, M. B., Kanstrup, M., Olsen, J., Pedersen, K. B., Petersen, P. V., Ramskov, C., Sørensen, L., Sørensen, M. & Wåhlin, S. (2020). Paläolithische Knochen- und Geweihartefakte des Spätglazials und Frühholozäns Dänemarks: Technologie und Datierung. Quartar International Yearbook for Ice Age and Stone Age Research, 67, 105-180. https://doi.org/10.7485/qu.2020.67.88925

Hussain, S. T. & Riede, F. (2020). Paleoenvironmental humanities: Challenges and prospects of writing deep environmental histories. Wiley Interdisciplinary Reviews: Climate Change, 11(5), Article e667. https://doi.org/10.1002/wcc.667

Hedberg, C., Jessen, K. S., Hansson, R. F., Heuckendorff, M. & Jensen, H. H. (2020). Palladium-Catalyzed C-S Bond Formation as a Tool for Latent-Active Glycosylation. Organic Letters, 22(18), 7068-7072. https://doi.org/10.1021/acs.orglett.0c02090

The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium (2020). Pan-cancer analysis of whole genomes. Nature, 578(7793), 82-93. https://doi.org/10.1038/s41586-020-1969-6

Wray, K. B. (2020). Paradigms in Structure: finally, a count. Scientometrics, 125(1), 823-828. https://doi.org/10.1007/s11192-020-03669-1

Marzocchi, U., Palma, E., Rossetti, S., Aulenta, F. & Scoma, A. (2020). Parallel artificial and biological electric circuits power petroleum decontamination: The case of snorkel and cable bacteria. Water Research, 173, Article 115520. https://doi.org/10.1016/j.watres.2020.115520

Griffiths, M. P., Grombacher, D. & Larsen, J. J. (2020). Parallelized Hybrid Bloch Solver for Surface Nuclear Magnetic Resonance. Abstract from Near Surface Geoscience 2020. https://doi.org/10.3997/2214-4609.202020063

Bautista, N. M., Crespel, A., Crossley, J., Padilla, P. & Burggren, W. (2020). Parental transgenerational epigenetic inheritance related to dietary crude oil exposure in Danio rerio. Journal of Experimental Biology, 223(16), Article jeb222224. https://doi.org/10.1242/jeb.222224

Dass, R. & Mulder, F. A. A. (2020). Paris-DÉCOR: A Protocol for the Determination of Fast Protein Backbone Amide Hydrogen Exchange Rates. In B. B. Kragelund & K. Skriver (Eds.), Intrinsically Disordered Proteins (pp. 337-344). Humana Press. https://doi.org/10.1007/978-1-0716-0524-0_17

Rasmussen, C. (2020). Particle sizing in geosciences: explanation of various techniques and pre-treatments. AU Library Scholarly Publishing Services. https://doi.org/10.7146/aul.374

Nielsen, K. H. (2020). På sikker afstand. Weekendavisen, (Sektion 4 (Ideer)), 5.

Kumar, S., Warrell, J., Li, S., McGillivray, P. D., Meyerson, W., Salichos, L., Harmanci, A., Martinez-Fundichely, A., Chan, C. W. Y., Nielsen, M. M., Lochovsky, L., Zhang, Y., Li, X., Lou, S., Pedersen, J. S., Herrmann, C., Getz, G., Khurana, E. & Gerstein, M. B. (2020). Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences. Cell, 180(5), 915-927.e16. https://doi.org/10.1016/j.cell.2020.01.032

Reyna, M. A., Haan, D., Paczkowska, M., Verbeke, L. P. C., Vazquez, M., Kahraman, A., Pulido-Tamayo, S., Barenboim, J., Wadi, L., Dhingra, P., Shrestha, R., Getz, G., Lawrence, M. S., Pedersen, J. S., Rubin, M. A., Wheeler, D. A., Brunak, S., Izarzugaza, J. M. G., Khurana, E. ... PCAWG Consortium (2020). Pathway and network analysis of more than 2500 whole cancer genomes. Nature Communications, 11(1), Article 729. https://doi.org/10.1038/s41467-020-14367-0

Narloch, W., Phillips, E. R., Piotrowski, J. A. & Ćwiek, M. (2020). Patterns of deformation within a subglacial shear zone: Implications for palaeo-ice stream bed evolution. Sedimentary Geology, 397, Article 105569. https://doi.org/10.1016/j.sedgeo.2019.105569

Ahmadi, K., Jalil Alavi, S., Zahedi Amiri, G., Mohsen Hosseini, S., Serra-Diaz, J. M. & Svenning, J. C. (2020). Patterns of density and structure of natural populations of Taxus baccata in the Hyrcanian forests of Iran. Nordic Journal of Botany, 38(3), Article e02598. https://doi.org/10.1111/njb.02598

Jakob, D. S., Wang, H., Zeng, G., Otzen, D. E., Yan, Y. & Xu, X. (2020). Peak Force Infrared - Kelvin Probe Force Microscopy. Angewandte Chemie International Edition, 59(37), 16083-16090. https://doi.org/10.1002/anie.202004211

Mandal, S., Gopal, R., Shcherbinin, M., D’Elia, A., Srinivas, H., Richter, R., Coreno, M., Bapat, B., Mudrich, M., Krishnan, S. R. & Sharma, V. (2020). Penning spectroscopy and structure of acetylene oligomers in He nanodroplets. Physical Chemistry Chemical Physics, 22(18), 10149-10157. Article 10149-10157. https://doi.org/10.1039/D0CP00689K

He, J., Becares, E. R., Thulstrup, P. W., Gamon, L. F., Pedersen, J. N., Otzen, D., Gourdon, P., Davies, M. J. & Hägglund, P. (2020). Peroxynitrous acid (ONOOH) modifies the structure of anastellin and influences its capacity to polymerize fibronectin. Redox Biology, 36, Article 101631. https://doi.org/10.1016/j.redox.2020.101631

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