Publications

Follow the latest publications from the Faculty of Natural Sciences.

Seidler, P., Hansen, M. B. & Christiansen, O. (2008). Towards fast computations of correlated vibrational wave functions: Vibrational coupled cluster response excitation energies at the two-mode coupling level. Journal of Chemical Physics, 128, 154113.

Hansen, K. M., Zhang, W. & Ingstrup, M. (2008). Towards Self-Managed Executable Petri Nets. In S. Brueckner, P. Robertson & U. Bellur (Eds.), Second IEEE International Conference on Self-Adaptive and Self-Organizing Systems (pp. 287-296). IEEE Computer Society Press. https://doi.org/10.1109/SASO.2008.59

Zhang, W. & Hansen, K. M. (2008). Towards Self-managed Pervasive Middleware using OWL/SWRL ontologies. In Fifth International Workshop on Modelling and Reasoning in Context. Proceedings Telecom, Bretagne. http://www.hydramiddleware.eu/hydra_papers/Towards_Self-managed_Pervasive_Middleware.pdf

Jørgensen, L. V., Andresen, G., Bertsche, W., Boston, A., Bowe, P. D., Cesar, C. L., Chapman, S., Charlton, M., Fajans, J., Fujiwara, M. C., Funakoshi, R., Gill, D. R., Hangst, J. S., Hayano, R. S., Hydomako, R., Jenkins, M. J., Kurchaninov, L., Madsen, N., Nolan, P. ... Collaboration, ALPHA. (2008). Towards trapped antihydrogen. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 357-362. https://doi.org/10.1016/j.nimb.2007.12.009

Bjorholm, S. W., Svenning, J.-C., Skov, F. & Balslev, H. (2008). To what extent does Tobler's law of geography apply to macroecology? A case study using American palms (Arecaceae). BMC Ecology, 8(11), 1-10. https://doi.org/10.1186/1472-6785-8-11

Heckmann, L.-H., Hovgaard, M. B., Besenbacher, F. & Scott-Fordsmand, J. J. (2008). Toxicity of seven different nanoparticles to Eisenia fetida. Poster session presented at SETAC Europe 18th Annual Meeting. World under stress: scientific and applied issues, Warsaw, Poland.

Kjærsgaard, A., Pertoldi, C., Loeschcke, V. & Witzner Hansen, D. (2008). Tracking the gaze of birds. Journal of Avian Biology, 39, 466-469. https://doi.org/10.1111/j.2008.0908-8857.04288.x

Damgård, I. B. & Toft, T. (2008). Trading Sugar Beet Quotas - Secure Multiparty Computation in Practice. ERCIM News, 73, 32-33.

Jensen, K., Aalst, W. M. P. V. D. & Billington, J. (Eds.) (2008). Transactions on Petri Nets and Other Models of concurrency I: ToPNoC. Springer. Lecture Notes in Computer Science Vol. 5100 https://doi.org/10.1007/978-3-540-89287-8

Borkhardt, B., Bendixen, C., Panitz, F., Asp, T., Øbro, J., Jørgensen, B., Harholt, J. & Ulvskov, P. (2008). Transcriptional profiling of lupin during seed filling in an attempt to identify GTs with roles in pectic RG-I biosynthesis. Poster session presented at Conference on Cell Wall Biosynthesis, Asilomar, California, United States.

Malagon, F. & Jensen, T. H. (2008). Transcription Initiation Events Control Levels of Cytoplasmic Ty1 RNA Bodies. Poster session presented at XIII Annual Meeting of the RNA Society, Berlin, Germany.

Hansen, J. H., Conley, L. N., Hedegaard, J. & Thomsen, B. (2008). Transcriptomic analysis of porcine skeletal muscles exposed to a single bout of endurance exercise. In Proceedings of ISAG2008: Poster 2040

Trier Frederiksen, J., Haugbølle, T. & Nordlund, Å. (2008). Trans-Debye Scale Plasma Modeling & Stochastic GRB Wakefield Plasma Processes. AIP Conference Proceedings, (1), 87-97. https://doi.org/10.1063/1.3002512

Bøttger, P., Tracz, Z., Pelc, M., Albertsen, M., Strandbygård, D. J., Romero-Ramos, M. & Lykke-Andersen, K. (2008). Transgenic mouse models for two inherited neuronal diseases. Poster session presented at 12th International ATPase Conference, Aarhus, Denmark.

Fregenal, D., Førre, M., Horsdal, E., Fisker, C. & Kjær, N. A. (2008). Transient intrashell resonances in Rydberg atoms. Journal of Physics B: Atomic, Molecular and Optical Physics, 41(10), 105003. https://doi.org/10.1088/0953-4075/41/10/105003

Lassen, K. B. & van Dongen, B. F. (2008). Translating Message Sequence Charts to other Process Languages using Process. Lecture Notes in Computer Science, 5100, 71-85. https://doi.org/10.1007/978-3-540-89287-8_5

van der Aalst, W. M. P. & Lassen, K. B. (2008). Translating Unstructured Workflow Processes to Readable BPEL: Theory and Implementation. Information and Software Technology, 50(3), 131-159.

Mansilla, F., Dominguez, C. A. G., Yeadon, J. E., Corydon, T. J., Burden, S. J. & Knudsen, C. R. (2008). Translation elongation factor eEF1A binds to a novel myosin binding protein-C-like protein. Molecular and Cellular Biology, 105(3), 847-858.

Leppälä, J., Bechsgaard, J. S., Schierup, M. H. & Savolainen, O. (2008). Transmission ratio distortion in Arabidopsis lyrata: effects of population divergence and the S-locus. Heredity, 100, 71-78.

Fukai, E., Dobrowolska, A. D., Madsen, L. H., Madsen, E. B., Umehara, Y., Kouchi, H., Hirochika, H. & Stougaard, J. (2008). Transposition of a 600 thousand-year-old LTR retrotransposon in the model legume Lotus japonicus. Plant Molecular Biology, 68(6), 653-63. https://doi.org/10.1007/s11103-008-9397-2

Clemensen, J., Larsen, S. B., Kirkevold, M. & Ejskjær, N. (2008). Treatment of Diabetic Foot Ulcers in the Home: Video Consultations as an Alternative to Outpatient Hospital Care. International Journal of Telemedicine and Applications, 2008.

Ferragina, P. & Satti, S. R. (2008). Tree Compression and Indexing. In Encyclopedia of Algorithms (pp. 1-99). Springer.

Larsen, M. H. & Mouritsen, K. N. (2008). Trematodes influence macroalgae consumption. Journal of the Marine Biological Association of the United Kingdom, 8, 32.

Miltersen, P. B. (2008). Trembling hand perfection is NP-hard. http://arxiv.org/PS_cache/arxiv/pdf/0812/0812.0492v1.pdf

Sinning, S., Severinsen, K., Hansen, C. G., Celik, L., Musgaard, M., Koldsø, H., Jensen, M., Jensen, H. H., Schiøtt, H. B. & Wiborg, O. (2008). Tricyclic antidepressant binding to the human serotonin transporter. Abstract from Gordon Research Conference, Membrane Transport Proteins, Il Ciocco, Italy.

Sinning, S., Severinsen, K., Celik, L., Musgaard, M., Koldsø, H., Schiøtt, H. B., Wiborg, O., Hansen, C. G., Jensen, M. & Jensen, H. H. (2008). Tricykliske antidepressivas binding til den humane serotonin transporter. Abstract from Psykiatriens 3. Forskningsdag, Risskov, Denmark.

Graversen, J. H., Laurberg, J. M., Andersen, M. H., Falk, E., Nieland, J., Christensen, J., Etzerodt, M., Thøgersen, H. C. & Moestrup, S. K. (2008). Trimerization of apolipoprotein A-I retards plasma clearance and preserves antiatherosclerotic properties. Journal of Cardiovascular Pharmacology, 51(2), 170-177.

Rodriguez, R. A., Garrido, E., Jensen, A. S., Fedorov, D. V. & Fynbo, H. O. U. (2008). Triple charged-particle decays of resonances illustrated by 12C states. Journal of Physics G: Nuclear and Particle Physics, 35(1).

Nielsen, N. C. & Khaneja, N. (2008). Triple Oscillating Field Technique for Accurate Distance Measurements by Solid-State NMR. Journal of Chemical Physics, 128, 015103.

Nielsen, M., Krukow, K. & Sassone, V. (2008). Trust Models in Ubiquitous Computing. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 366(1881), 3781-3793. https://doi.org/10.1098/rsta.2008.0134

Sanggaard, K. W., Sonne-Schmidt, C. S., Hansen, T. P. K., Kristensen, T., Wisniewski, H.-G., Thøgersen, I. B. & Enghild, J. J. (2008). TSG-6 transfers proteins between glycosaminoglycans via a Ser28-mediated covalent catalytic mechanism. Journal of Biological Chemistry, 283(49), 33919-26. https://doi.org/10.1074/jbc.M804240200

Piotrowski, J. A., Kristensen, T. B., Klintoe, L., Huuse, M., Lykke-Andersen, H. & Clausen, O. R. (2008). Tunnel valleys in the North Sea as evidence for channelized subglacial meltwater erosion. Abstract from 33rd International Geological Congress, Oslo, Norway.

Andersen, M., Jacobsen, L., Grønkjær, P. & Skov, C. (2008). Turbidity increases behavioural diversity in northern pike, Esox lucius L., during early summer. Fisheries Management & Ecology Online, 15, 377-383.

Boudol, G., Castellani, I., Hennessy, M., Nielsen, M. & Winskel, G. (2008). Twenty Years on: Reflections on the CEDISYS Project: Combining True Concurrency with Process Algebra. Lecture Notes in Computer Science, 5065, 757-777. https://doi.org/10.1007/978-3-540-68679-8_47

Nygaard, N., Piil, R. T. & Mølmer, K. (2008). Two-channel Feshbach physics in a structured continuum. Physical Review A, 78(023617). https://doi.org/10.1103/PhysRevA.78.023617

Mamdouh, W., E. A. Kelly, R., Dong, M., N. Kantorovich, L. & Besenbacher, F. (2008). Two-Dimensional Supramolecular Nanopatterns Formed by the Coadsorption of Guanine and Uracil at the Liquid/SolidInterface. Journal of the American Chemical Society, 130, 695-702. https://doi.org/10.1021/ja076832f

Westergaard, M. & Kristensen, L. M. (2008). Two Interfaces to the CPN Tools Simulator. In Ninth Workshop and Tutorial on Practical Use of Coloured Petri Nets and the CPN Tools (pp. 83-102). Department of Computer Science.

Heatubun, C. D. & Barfod, A. S. (2008). Two new species of Licuala (Arecaceae; Coryphoideae) from Western new Guinea. Blumea, 53, 429-434.

Champenois, C., Hagel, G., Knoop, M., Houssin, M., Zumsteg, C., Vedel, F. & Drewsen, M. (2008). Two-step Doppler cooling of a three-level ladder system with an intermediate metastable level. Physical Review A, 77(033411). https://doi.org/10.1103/PhysRevA.77.033411

Hjermitslev, H. H. (2008). Uden for andedammen: Dansk idéhistorie i internationalt lys. In Festskrift: i anledning af Institut/Afdeling for idéhistories 40 års samt Slagmarks 25 års jubilæum (1. ed., pp. 16-25). Slagmark.

Sørensen, M. K., Lassen, J. & Mark, T. (2008). Udvælg avlsdyr efter S-indekset - holbarhed er ikke alt: Holdbarhed er ikke det bedste mål for koens økonomiske formåen. Kvaeg, (9), 28-29.

Cuoco, A. & Hannestad, S. (2008). Ultra-high energy Neutrinos from Centaurus A and the Auger hot spot. Physical Review D, 78(023007). https://doi.org/10.1103/PhysRevD.78.023007

Villesen, P., Madsen, B. E. & Wiuf, C. H. (2008). Ultra short tandem repeats: A target for disease mutations. Poster session presented at 9th International Conference on Systems Biology, Gothenburg, Sweden.

Bahari, A., Morgen, P. & Li, Z. (2008). Ultra thin silicon nitride films on Si(100) studied with core level photoemission. Surface Science, 602, 2315–2324.

Knudsen, J. (2008). Ultrathin surface alloys and oxides as model systems for hetereogeneous catalysis. Aarhus Universitetsforlag.

Kelly, R. E., Lukas, M., Kantorovich, L. N., Otero Martin, R., Xu, W., Mura, M., Lægsgaard, E., Stensgaard, I. & Besenbacher, F. (2008). Understanding the disorder of the DNA base cytosine on the Au(111) surface. Journal of Chemical Physics, 129, 184707. https://doi.org/10.1063/1.3001585

Tougaard, J., Madsen, P. T. & Wahlberg, M. (2008). Underwater noise from construction and operation of offshore wind farms. Bioacoustics - the International Journal of Animal Sound and its Recording, 17(1-3), 143-146.

Rasmusson, A. G., Handa, H. & Møller, I. M. (Eds.) (2008). Unique aspects of plant mitochondria. Mitochondrion, 8(1), 1-4.

Fjelstad, J., Fuchs, J., Runkel, I. & Schweigert, C. (2008). Uniqueness of open / closed rational CFT with given algebra of open states. Advances in Theoretical and Mathematical Physics, 12(6), 1283-1375. http://projecteuclid.org/euclid.atmp/1221834534

Madsen, J. (2008). Universal charge-radius relation for subatomic and astrophysical compact objects. Physical Review Letters, 100(151102). https://doi.org/10.1103/PhysRevLett.100.151102

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