Publications

Follow the latest publications from the Faculty of Natural Sciences.

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Westergaard, J. A., Foged, N., Auken, E. & Sørensen, K. I. (2004). SkyTEM kortlægning Forumlund - Datarapport.

Westergaard, J. A., Foged, N., Auken, E. & Sørensen, K. I. (2004). SkyTEM kortlægning Tyrsting - Datarapport.

Westergaard, J. A., Foged, N., Auken, E. & Sørensen, K. I. (2004). SkyTEM kortlægning Viuf - Datarapport.

Westergaard, U. B., Kirkegaard, K., Sørensen, E. S., Jacobsen, C., Nielsen, M. S., Pedersen, J. C. M. & Madsen, P. S. (2005). SorCS3 does not require propeptide cleavage to bind nerve growth factor. FEBS Letters, 579(5), 1172-1176.

Westergaard, M. & Kindler, E. (Ed.) (2004). Towards a High-level Petri Net Type Type Definition. In Proceeding of the Workshop on the Definition, Implementation and Application of a Standard Interchange Format for Petri Nets

Westergaard, U. B., Andersen, M. H., Heegaard, C. W., Fedosov, S. N. & Petersen, T. E. (2003). Tetranectin binds hepatocyt growth factor and tissue-type plasminogen activator. FEBS journal, 270, 1850-1854.

Westergaard, U. B., Kirkegaard, E., Sørensen, E. S., Jacobsen, C., Nielsen, M. S., Petersen, C. M. & Madsen, P. (2005). SorCS3 does not require propeptide cleavage to bind nerve growth factor. FEBS Letters, 579, 1172-1176.

Westergaard, M. & Lassen, K. B. (2006). Building and Deploying Visualizations of Coloured Petri Net Models Using BRITNeY Animation and CPN Tools. In Proceedings of Sixth Workshop and Tutorial on Practical Use of Coloured Petri Nets and the CPN Tools, volume PB-576 of DAIMI (pp. 119-136)

Westergaard, J., Auken, E., Foged, N. & Sørensen, K. I. (2005). SkyTEM kortlægning Give - Datarapport . Geofysisk afdeling, Geologisk Institut, Aarhus Universitet.

Westergaard, J., Foged, N., Auken, E. & Sørensen, K. I. (2005). SkyTEM survey Bording - Data report. Geofysisk afdeling, Geologisk Institut, Aarhus Universitet.

Westergaard, J., Auken, E. & Sørensen, K. I. (2005). SkyTEM kortlægning Bevtoft-Over Jerstal-Vedsted og Barsø - Datarapport. Geofysisk afdeling, Geologisk Institut, Aarhus Universitet.

Westergaard, J., Auken, E. & Sørensen, K. I. (2005). SkyTEM Survey Aabenraa-Rødekro - Data report. Geofysisk afdeling, Geologisk Institut, Aarhus Universitet.

Westergaard, J., Auken, E., Foged, N. & Sørensen, K. I. (2005). SkyTEM kortlægning Jydske Aas - Datarapport. Geofysisk afdeling, Geologisk Institut, Aarhus Universitet.

Westergaard, J., Auken, E., Foged, N. & Sørensen, K. I. (2005). SkyTEM kortlægning Stenløse - Datarapport. Geofysisk afdeling, Geologisk Institut, Aarhus Universitet.

Westergaard, J., Auken, E. & Sørensen, K. I. (2006). SkyTEM survey Hamburg - Data report. Geofysisk afdeling, Geologisk Institut, Aarhus Universitet.

Westergaard, J., Auken, E. & Sørensen, K. I. (2006). TEM survey Vlagtwedde - Data report. Geofysisk afdeling, Geologisk Institut, Aarhus Universitet.

Westergaard, M. & Lassen, K. B. (2006). The BRITNeY Suite Animation Tool. In Petri Nets and Other Models of Concurrency ICATPN 2006 (Vol. 4024, pp. 331-340). Springer.

Westergaard, M., Kristensen, L. M., Brodal, G. S. & Arge, L. (2007). The ComBack Method - Extending Hash Compaction with Backtracking. In Petri Nets and Other Models of Concurrency – ICATPN 2007: 28th International Conference on Applications and Theory of Petri Nets and Other Models of Concurrency, ICATPN 2007, Siedlce, Poland, June 25-29, 2007. Proceedings (pp. 455-464). Springer. https://doi.org/10.1007/978-3-540-73094-1_26

Westergaard, M. & Kristensen, L. M. (2008). Two Interfaces to the CPN Tools Simulator. In Ninth Workshop and Tutorial on Practical Use of Coloured Petri Nets and the CPN Tools (pp. 83-102). Department of Computer Science.

Westergaard, M. & Kristensen, L. M. (2008). JoSEL: A Job Specification and Execution Language for Model Checking. In Ninth Workshop and Tutorial on Practical Use of Coloured Petri Nets and the CPN Tools (pp. 7-26). Department of Computer Science.

Westergaard, M. (2007). A Game-theoretic View on Behavioural Visualisation. In A. Cerone & P. Curzon (Eds.), Electronic Notes in Theoretical Computer Science: Proceedings of the 2nd International Workshop on Formal Methods for Interactive Systems (FMIS 2007) (Vol. 208, pp. 113-129). Pergamon Press.

Westergaard, M. (2006). Game Coloured Petri Nets. In K. Jensen (Ed.), Seventh Workshop and Tutorial on Practical Use of Coloured Petri Nets and the CPN Tools (Vol. PB-579, pp. 281-301). Aarhus Universitetsforlag.

Westergaard, M. (2006). The BRITNeY Suite: A Platfor for Experiments. In K. Jensen (Ed.), Seventh Workshop and Tutorial on Practical Use of Coloured Petri Nets and the CPN Tools: CPN'06 workshop (pp. 97-116). Aarhus Universitetsforlag.

Westergaard, M. (2002). Supporting Multiple Pointing Devices in Microsoft Windows. In L. Cardelli (Ed.), Proceedings of Microsoft Summer Workshop for Faculty and PhDs.: Supporting Multiple Pointing Devices in Microsoft Windows (pp. 11. Talk). Microsoft Press.

Westergaard, M. (2007). Hvorfor det er smart at have arbitrært mange hænder. Prosabladet, Artikel 6.

Westergaard, M., Evangelista, S. & Kristensen, L. M. (2009). ASAP: An Extensible Platform for State Space Analysis. Lecture Notes in Computer Science, 303-312. https://doi.org/10.1007/978-3-642-02424-5_18

Westergaard, M. & Kristensen, L. M. (2009). The Access/CPN Framework: A Tool for Interacting With the CPN Tools Simulator. Lecture Notes in Computer Science, 313-322. https://doi.org/10.1007/978-3-642-02424-5_19

Westergaard, M., Kristensen, L. M. & Kuusela, M. (2009). Towards Cosimulating SystemC and Coloured Petri Net Models for SoC Functional and Performance Evaluation. In C. Frydman, F. Longo & K. Mekouar (Eds.), 21st European Modeling and Simulation Symposium: International Mediterranean and Latin American Modelling Multiconference (pp. 47-53). Universidad De La Laguna.

Westergaard, M., Kristensen, L. M. & Kuusela, M. (2009). A Prototype for Cosimulating SystemC and Coloured Petri Net Models. D A I M I P B, (590), 1-20.

Westergaard, M., Henningsen, J., Svendsen, M. L., Johansen, C., Jensen, U. B., Schrøder, H. D., Kratchmarova - Blagoeva, I. H., Berge, R. K., Iversen, L., Bolund, L., Kragballe, K. & Kristiansen, K. (2001). Modulation of keratinocyte gene expression and differentiation by PPAR-selective ligands and tetradecylthioacetic acid. Journal of Investigative Dermatology, 116(5), 702-12. https://doi.org/10.1046/j.0022-202x.2001.doc.x

Westergaard, M. (2007). Looking Good, Behaving Well - Behavioural Verification and Visualisation of Formal Models of Concurrent Systems.

Westensee, I. N., Brodszkij, E., Qian, X., Marcelino, T. F., Lefkimmiatis, K. & Städler, B. (2021). Mitochondria Encapsulation in Hydrogel-Based Artificial Cells as ATP Producing Subunits. Small, 17(24), Article 2007959. https://doi.org/10.1002/smll.202007959

Westensee, I. N. & Stadler, B. M. (2023). Artificial cells eavesdropping on HepG2 cells. Interface Focus, 13(5), Article 20230007. https://doi.org/10.1098/rsfs.2023.0007

Westensee, I. N., Thomsen, K. L., Mookerjee, R. P. & Stadler, B. M. (2024). Antioxidant Microgels Support Peroxide-Challenged Hepatic Cells. Advanced Biology, 8(4), Article e2300547. https://doi.org/10.1002/adbi.202300547

Westensee, I. N., Paffen, L., Pendlmayr, S., Andres, P. D. D., Ramos Docampo, M. A. & Stadler, B. M. (2024). Artificial Cells And HepG2 Cells in 3D Bioprinted Arrangements. Advanced Healthcare Materials, 13(12), Article 2303699. https://doi.org/10.1002/adhm.202303699

Westensee, I. N., Andres, P. D. D. & Stadler, B. M. (2024). From Single-Compartment Artificial Cells to Tissue-Like Materials. Advanced Materials Technologies, 9(18), Article 2301804. https://doi.org/10.1002/admt.202301804

Westensee, I. N., de Dios Andres, P., Brodszkij, E., Descours, P. L., Perez-Rodriguez, D., Spinazzola, A., Mookerjee, R. P. & Städler, B. (2024). Engineered Lipids for Intracellular Reactive Oxygen Species Scavenging in Steatotic Hepatocytes. Small, 20(44), Article 2400816. https://doi.org/10.1002/smll.202400816

Westensee, I. N. (2023). Interfacing Synthetic Biology with Hepatocytes. [PhD thesis, Aarhus University]. Aarhus University.

Westberg, M., Holmegaard, L., Pimenta, F. M., Etzerodt, M. & Ogilby, P. R. (2015). Rational design of an efficient, genetically encodable, protein-encased singlet oxygen photosensitizer. Journal of the American Chemical Society, 137(4), 1632-42. https://doi.org/10.1021/ja511940j

Westberg, M., Bregnhøj, M., Blazquez-Castro, A., Breitenbach, T., Etzerodt, M. & Ogilby, P. R. (2016). Control of Singlet Oxygen Production in Experiments Performed on Single Mammalian Cells. Journal of Photochemistry and Photobiology, A: Chemistry, 321, 297-308. https://doi.org/10.1016/j.jphotochem.2016.01.028

Westberg, M., Bregnhøj, M., Banerjee, C., Blazquez-Castro, A., Breitenbach, T. & Ogilby, P. R. (2016). Exerting better control and specificity with singlet oxygen experiments in live mammalian cells. Methods, 109, 81-91. https://doi.org/10.1016/j.ymeth.2016.07.001

Westberg, M., Bregnhøj, M., Etzerodt, M. & Ogilby, P. R. (2017). Temperature Sensitive Singlet Oxygen Photosensitization by LOV-Derived Fluorescent Flavoproteins. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 121(12), 2561-2574. https://doi.org/10.1021/acs.jpcb.7b00561

Westberg, M., Bregnhøj, M., Etzerodt, M. & Ogilby, P. R. (2017). No Photon Wasted: An Efficient and Selective Singlet Oxygen Photosensitizing Protein. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 121(40), 9366-9371. https://doi.org/10.1021/acs.jpcb.7b07831

Westberg, M., Etzerodt, M. & Ogilby, P. R. (2019). Rational Design of Genetically Encoded Singlet Oxygen Photosensitizing Proteins. Current Opinion in Structural Biology, 57(August), 56-62. https://doi.org/10.1016/j.sbi.2019.01.025

Westberg, M., Su, Y., Zou, X., Huang, P., Rustagi, A., Garhyan, J., Patel, P. B., Fernandez, D., Wu, Y., Hao, C., Lo, C. W., Karim, M., Ning, L., Beck, A., Saenkham-Huntsinger, P., Tat, V., Drelich, A., Peng, B. H., Einav, S. ... Lin, M. Z. (2024). An orally bioavailable SARS-CoV-2 main protease inhibitor exhibits improved affinity and reduced sensitivity to mutations. Science Translational Medicine, 16(738), Article eadi0979. https://doi.org/10.1126/scitranslmed.adi0979

Westberg, M. (2017). Rational Design of Efficient Singlet Oxygen Photosensitizing Proteins.

West, J. B., Andersen, T., Brooks, R. L., Folkmann, F., Kjeldsen, H. & Knudsen, H. (2001). Photoionization of singly and doubly charged aluminium ions in the extreme ultraviolet: Absolute cross sections and resonance structures. Physical Review A, 63, 52719.

West, J. B., Hansen, J. E., Kristensen, B., Folkmann, F. & Kjeldsen, H. (2003). Revised interpretation of the photoionization of Cr⁺ in the 3p excitation region. Journal of Physics B: Atomic, Molecular and Optical Physics, 36, 327-327.

West, J. B., Kjeldsen, H., Folkmann, F. & Andersen, T. (2001). Photoionization of doubly-charged Ca ions. Journal of Physics B: Atomic, Molecular and Optical Physics, 34, 4035.

West, D. C., Rees, C. G., Duchesne, L., Patey, S. J., Terry, C. J., Turnbull, J. E., Delehedde, M., Heegaard, C. W., Allain, F., Vanpouille, C., Ron, D. & Fernig, D. G. (2005). Interactions of multiple heparin binding growth factors with neuropilin-1 and potentiation of the activity of fibroblast growth factor-2. Journal of Biological Chemistry, 280, 13457-13464.

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Revised 11.12.2025

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