Publications

Follow the latest publications from the Faculty of Natural Sciences.

Nogales, M., Heleno, R., Rumeu, B., A., G.-C., Traveset, A., Vargas, P. & Olesen, J. M. (2015). Seed-dispersal networks on the Canaries and the Galápagos archipelagos: interaction modules as biogeographical entities. Global Ecology and Biogeography, 25(7). https://doi.org/10.1111/geb.12315

Aronov, B., Driemel, A., Van Kreveld, M., Löffler, M. & Staals, F. (2015). Segmentation of trajectories on nonmonotone criteria. A C M Transactions on Algorithms, 12(2), Article 26. https://doi.org/10.1145/2660772

Jensen, F. (2015). Segmented contracted basis sets optimized for nuclear magnetic shielding. Journal of Chemical Theory and Computation, 11(1), 132-138. https://doi.org/10.1021/ct5009526

Hendrickx, F., Vanthournout, B. & Taborsky, M. (2015). Selection for costly sexual traits results in a vacant mating niche and male dimorphism. Evolution, 69(8), 2105-2117. https://doi.org/10.1111/evo.12720

Larsen, S. A., Meldgaard, T., Fridriksdottir, A. J., Lykkemark, S., Poulsen, P. C., Overgaard, L. F., Petersen, H. B., Petersen, O. W. & Kristensen, P. (2015). Selection of a breast cancer subpopulation-specific antibody using phage display on tissue sections. Immunologic Research, 62(3), 263-272. https://doi.org/10.1007/s12026-015-8657-x

Larsen, S. A., Meldgaard, T., Lykkemark, S., Mandrup, O. A. & Kristensen, P. (2015). Selection of cell-type specific antibodies on tissue-sections using phage display. Journal of Cellular and Molecular Medicine, 19(8), 1939-1948. https://doi.org/10.1111/jcmm.12568

Ning, Y., Cramer, J. R., Nuermaimaiti, A., Svane, K. L., Yu, M., Lægsgaard, E., Besenbacher, F., Xue, Q.-K., Ma, X., Hammer, B., Gothelf, K. V. & Linderoth, T. R. (2015). Selection of conformational states in self-assembled surface structures formed from an oligo(naphthylene-ethynylene) 3-bit binary switch. Journal of Chemical Physics, 142, Article 101922. https://doi.org/10.1063/1.4908062

Sørensen, H. P., Xu, P., Jiang, L., Kromann-Hansen, T., Jensen, K. J., Huang, M. & Andreasen, P. A. (2015). Selection of High-Affinity Peptidic Serine Protease Inhibitors with Increased Binding Entropy from a Back-Flip Library of Peptide-Protease Fusions. Journal of Molecular Biology, 427(19), 3110-3122. https://doi.org/10.1016/j.jmb.2015.08.005

Sánchez-Martín, D., Sørensen, M. D., Lykkemark, S., Sanz, L., Kristensen, P., Ruoslahti, E. & Álvarez-Vallina, L. (2015). Selection strategies for anticancer antibody discovery: searching off the beaten path. Trends in Biotechnology, 33(5), 292-301. https://doi.org/10.1016/j.tibtech.2015.02.008

Ma, P., Deshmukh, Y. S., Wilsens, C. H. R. M., Hansen, M. R., Graf, R. & Rastogi, S. (2015). Self-assembling process of Oxalamide compounds and their nucleation efficiency in bio-degradable Poly(hydroxyalkanoate)s. Scientific Reports, 5, Article 13280. https://doi.org/10.1038/srep13280

Nunes, F., Verdezoto, N., Fitzpatrick, G., Kyng, M., Grönvall, E. & Storni, C. (2015). Self-Care Technologies in HCI: Trends, Tensions, and Opportunities. ACM Transactions on Computer-Human Interaction, 22(6), Article 33. https://doi.org/10.1145/2803173

Barndorff-Nielsen, O. E., Sauri, O. & Szozda, B. (2015). Selfdecomposable Fields. arxiv.org. http://arxiv.org/abs/1502.01520

Barndorff-Nielsen, O. E., Sauri, O. & Szozda, B. (2015). Selfdecomposable Fields. T.N. Thiele Centre, Department of Mathematics, Aarhus University. Thiele Research Reports No. 02 http://math.au.dk/publs?publid=1035

Riber, C. F., Smith, A. A. A. & Zelikin, A. N. (2015). Self-Immolative Linkers Literally Bridge Disulfide Chemistry and the Realm of Thiol-Free Drugs. Advanced Healthcare Materials, 4(12), 1887-1890. https://doi.org/10.1002/adhm.201500344

Frederiksen, S. K. S. (2015). Semi-algebraic Geometry for Stochastic Games. Department of Computer Science, Aarhus University.

Andersen, H. H., Tubbenhauer, D. & Stroppel, C. (2015). Semisimplicity of Hecke and (walled) Brauer Algebras. arxiv.org. http://arxiv.org/abs/1507.07676

Becker, J., Bøjesen, E. D., Birgisson, S., Nørby, P. & Brummerstedt Iversen, B. (2015). Se nanomaterialer blive til - in situ krystallografi. Aktuel Naturvidenskab, (1), 26-30. http://aktuelnaturvidenskab.dk/fileadmin/Aktuel_Naturvidenskab/nr-1/AN1-2015nano_krystallografi.pdf

Lammertsma, E. I., Donders, T. H., Pearce, C., Cremer, H., Gaiser, E. E. & Wagner-Cremer, F. (2015). Sensitivity of wetland hydrology to external climate forcing in central Florida. Quaternary Research, 84(3), 287-300. https://doi.org/10.1016/j.yqres.2015.09.003

Bosansky, B. & Cemak, J. (2015). Sequence-Form Algorithm for Computing Stackelberg Equilibria in Extensive-Form Games. In Proceedings of the Twenty-Ninth AAAI Conference on Artificial Intelligence (pp. 805-811). AAAI Press. http://www.aaai.org/ocs/index.php/AAAI/AAAI15/paper/view/9610

Govin, A., Capron, E., Tzedakis, P. C., Verheyden, S., Ghaleb, B., Hillaire-Marcel, C., St-Onge, G., Stoner, J. S., Bassinot, F., Bazin, L., Blunier, T., Combourieu-Nebout, N., El Ouahabi, A., Genty, D., Gersonde, R., Jimenez-Amat, P., Landais, A., Martrat, B., Masson-Delmotte, V. ... Zahn, R. (2015). Sequence of events from the onset to the demise of the Last Interglacial: Evaluating strengths and limitations of chronologies used in climatic archives. Quaternary Science Reviews, 129, 1-36. https://doi.org/10.1016/j.quascirev.2015.09.018

Clouston, R. & Goré, R. (2015). Sequent Calculus in the Topos of Trees. In A. Pitts (Ed.), Foundations of Software Science and Computation Structures : 18th International Conference, FOSSACS 2015, Held as Part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2015, London, UK, April 11-18, 2015, Proceedings (Vol. 9034, pp. 133-147). Springer VS. http://link.springer.com/chapter/10.1007/978-3-662-46678-0_9

Jiang, Z., Zhang, S., Yang, C., Kjems, J., Huang, Y., Besenbacher, F. & Dong, MD. (2015). Serum induced degradation of 3D DNA box origami observed by high speed atomic force microscope. Nano Research, 8(7), 2170-2178. https://doi.org/10.1007/s12274-015-0724-z

Jiang, Z., Zhang, S., Yang, C., Zadegan, R. M., Kjems, J., Huang, Y., Besenbacher, F. & Dong, M. (2015). Serum-induced degradation of 3D DNA box origami observed with high-speed atomic force microscopy (vol 8, pg 2170, 2015). Nano Research, 8(10), 3446-3446. https://doi.org/10.1007/s12274-015-0848-1

Lieberoth, A. (2015). Shallow gamification: Testing psychological effects of framing an activity as a game. Games and Culture: A Journal of Interactive Media, 10(3), 229-248. https://doi.org/10.1177/1555412014559978

Saad-Sulonen, J. (2015). Sharing tools and know-how: challenges and potential approaches for self-organized urban communities. Paper presented at CHI, Seoul, Korea, Republic of. https://designforsharingdotcom.files.wordpress.com/2015/03/saad-sulonen_chi2015_ws_designforsharing.pdf

Pettie, S. (2015). Sharp Bounds on Formation-free Sequences. In P. Indyk (Ed.), Proceedings of the Twenty-Sixth Annual ACM-SIAM Symposium on Discrete Algorithms, SODA '15 (pp. 592-604 ). Society for Industrial and Applied Mathematics. http://dl.acm.org/citation.cfm?id=2722155

Vignoli, G., Fiandaca, G., Christiansen, A. V., Kirkegaard, C. & Auken, E. (2015). Sharp spatially constrained inversion with applications to transient electromagnetic data. Geophysical Prospecting, 63(1), 243-255. https://doi.org/10.1111/1365-2478.12185

Fiandaca, G., Kirkegaard, C., Foged, N., Christiansen, A. V. & Auken, E. (2015). Sharp spatially-decoupled inversion of airborne electromagnetic data for improved model integration. In 1st European Airborne Electromagnetics Conference - Held at Near Surface Geoscience 2015 (pp. 118-122). European Association of Geoscientists and Engineers. https://doi.org/10.3997/2214-4609.201413884

Simova, I., Violle, C., Kraft, N. J. B., Storch, D., Svenning, J.-C., Boyle, B., Donoghue, J. C., Jorgensen, P., McGill, B. J., Morueta-Holme, N., Piel, W. H., Peet, R. K., Regetz, J., Schildhauer, M., Spencer, N., Thiers, B., Wiser, S. & Enquist, B. J. (2015). Shifts in trait means and variances in North American tree assemblages: species richness patterns are loosely related to the functional space. Ecography, 38(7), 649-658. https://doi.org/10.1111/ecog.00867

Haahr-Lillevang, L., Wædegaard, K., Sandkamm, D. B., Mouskeftaras, A., Guizard, S. & Balling, P. (2015). Short-pulse laser excitation of quartz: experiments and modelling of transient optical properties and ablation. Applied Physics A: Materials Science & Processing, 120(4), 1221-1227. https://doi.org/10.1007/s00339-015-9307-9

Pujolar, J. M., Jacobsen, L. M. W., Bekkevold, D., Lobon-Cervia, J., Jonsson, B., Bernatchez, L. & Hansen, M. M. (2015). Signatures of natural selection between life cycle stages separated by metamorphosis in European eel. BMC Genomics, 16, Article 600. https://doi.org/10.1186/s12864-015-1754-3

Foldbjerg, R., Jiang, X., Miclaus, T., Chen, C., Autrup, H. & Beer, C. (2015). Silver nanoparticles – wolves in sheep's clothing? Toxicology Research, 4, 563-575. https://doi.org/10.1039/C4TX00110A

Fernandez-Garcia, J. P., Cubero, M., Acosta, L., Alcorta, M., Alvarez, M. A. G., Borge, M. J. G., Buchmann, L., Diget, C. A., Falou, H. A., Fulton, B., Fynbo, H. O. U., Galaviz, D., Gomez-Camacho, J., Kanungo, R., Lay, J. A., Madurga, M., Martel, I., Moro, A. M., Mukha, I. ... Walden, P. (2015). Simultaneous analysis of the elastic scattering and breakup channel for the reaction ¹¹Li+²⁰⁸Pb at energies near the Coulomb barrier. Physical Review C - Nuclear Physics, 92(4), Article 044608. https://doi.org/10.1103/PhysRevC.92.044608

Svane, K., Dong, Y., Groves, M. N., Demers-Carpentier, V., Lemay, J.-C., Ouellet, M., Hammer, B. & McBreen, P. H. (2015). Single-chiral-catalytic-surface-sites: STM and DFT study of stereodirecting complexes formed between (R)-1-(1-naphthyl)ethylamine and ketopantolactone on Pt(111). Catalysis Science & Technology, 5(2), 743-753. https://doi.org/10.1039/c4cy01044b

Jensen, F. H., Wahlberg, M., Beedholm, K., Johnson, M., Aguilar de Soto, N. & Madsen, P. P. T. (2015). Single-click beam patterns suggest dynamic changes to the field of view of echolocating Atlantic spotted dolphins (Stenella frontalis) in the wild. Journal of Experimental Biology, 218, 1314-1324. https://doi.org/10.1242/jeb.116285

Geach, M., Thomsen, K., Buylaert, J.-P., Murray, A., Mather, A. E., Telfer, M. W. & Stokes, M. (2015). Single-grain and multi-grain OSL dating of river terrace sediments in the Tabernas Basin, SE Spain. Quaternary Geochronology, 30(B), 213-218. https://doi.org/10.1016/j.quageo.2015.05.021

Thomsen, K., Kook, M., Murray, A., Jain, M. & Lapp, T. (2015). Single-grain results from an EMCCD-based imaging system. Radiation Measurements, 81, 185-191. https://doi.org/10.1016/j.radmeas.2015.02.015

Hildebrandt, L. (2015). Single molecule fluorescence microscopy studies of man-made DNA nanostructures.

Jepsen, M. DE., Sørensen, R. S., Andersen, E. S., Kjems, J. & Birkedal, V. (2015). Single Molecule FRET Analysis of the Closed and Open States of a DNA Origami Box. Biophysical Journal, 108(2, suppl. 1), 175a. https://doi.org/10.1016/j.bpj.2014.11.968

Orlandi, R., Mücher, D., Raabe, R., Jungclaus, A., Pain, S. D., Bildstein, V., Chapman, R., de Angelis, G., Johansen, J. G., Van Duppen, P., Andreyev, A. N., Bottoni, S., Cocolios, T. E., De Witte, H., Diriken, J., Elseviers, J., Flavigny, F., Gaffney, L. P., Gernhäuser, R. ... Wimmer, K. (2015). Single-neutron orbits near ⁷⁸Ni: Spectroscopy of the N=49 isotope ⁷⁹Zn. Physics Letters B, 740, 298-302. https://doi.org/10.1016/j.physletb.2014.12.006

Bellotti, F. F. & Yamashita, M. T. (2015). Single Particle Momentum Distributions for Three-Bosons in Two and Three Dimensions and Dimensional Crossover. Few-Body Systems, 56(11-12), 905-913. https://doi.org/10.1007/s00601-015-1022-8

Stief, P., Kamp, A., Glud, A., Marzocchi, U., Lundgaard, A. S. B., Thamdrup, B. & Glud, R. N. (2015). Sinking diatom aggregates: overlooked anaerobic hotspots in the marine nitrogen cycle. Abstract from ASLO Aquatic Sciences Meeting, Granada, Spain.

Nielsen, K. H., Balling, G., Hope, T. & Nakamura, M. (2015). Sipping Science: The Interpretative Flexibility of Science Cafés in Denmark and Japan. East Asian Science, Technology and Society: an international journal, 9(1), 1-21. https://doi.org/10.1215/18752160-2832109

Bykov, D. & Neese, F. (2015). Six-Electron Reduction of Nitrite to Ammonia by Cytochrome c Nitrite Reductase: Insights from Density Functional Theory Studies. Inorganic Chemistry, 54(19), 9303-9316. https://doi.org/10.1021/acs.inorgchem.5b01506

Øllgaard, B. (2015). Six new species and some nomenclatural changes in neotropical lycopodiaceae. Nordic Journal of Botany, 33(2), 186-196. https://doi.org/10.1111/njb.00652

Wang, J., Cao, Y., Li, Q., Liu, L. & Dong, M. (2015). Size Effect of Graphene Oxide on Modulating Amyloid Peptide Assembly. Chemistry - A European Journal, 21(27), 9632-9637. https://doi.org/10.1002/chem.201500577

Ettenhuber, P. (2015). Size Matters: Enabling large-scale coupled cluster calculations.

Baader, S. & Bødker, S. (2015). SketchCode – an extensible code editor for crafting software. In End-User Development: 5th International Symposium, IS-EUD 2015, Madrid, Spain, May 26-29, 2015. Proceedings (Vol. 9083, pp. 211-216). Springer. https://doi.org/10.1007/978-3-319-18425-8_18

Branscheid, A., Marchais, A., Schott, G., Lange, H., Gagliardi, D., Andersen, S. U., Voinnet, O. & Brodersen, P. (2015). SKI2 mediates degradation of RISC 5'-cleavage fragments and prevents secondary siRNA production from miRNA targets in Arabidopsis. Nucleic Acids Research, 43(22), 10975-10988. https://doi.org/10.1093/nar/gkv1014

Lyngsø, J., Al-Manasir, N., Behrens, M. A., Zhu, K., Kjøniksen, A.-L., Nyström, B. & Pedersen, J. S. (2015). Small-Angle X-ray Scattering Studies of Thermoresponsive Poly(N-isopropylacrylamide) Star Polymers in Water: Macromolecules. Macromolecules, 48(7), 2235-2243. https://doi.org/10.1021/acs.macromol.5b00057

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