Publications

Follow the latest publications from the Faculty of Natural Sciences.

Holm, E. B., Nygaard, A., Dakin, J., Hannestad, S. & Tram, T. (2024). PROSPECT: A profile likelihood code for frequentist cosmological parameter inference. Monthly Notices of the Royal Astronomical Society, 535(4), 3686-3699. https://doi.org/10.1093/mnras/stae2555

Rasulov, U., Wang, H. K., Viennet, T., Droemer, M. A., Matosin, S., Schindler, S., Sun, Z. Y. J., Mureddu, L., Vuister, G. W., Robson, S. A., Arthanari, H. & Kuprov, I. (2024). Protein NMR assignment by isotope pattern recognition. Science Advances, 10(36), Article eado0403. https://doi.org/10.1126/sciadv.ado0403

Jensen, K. T., Nielsen, N. S., Viana Almeida, A., Thøgersen, I. B., Enghild, J. J. & Harwood, S. L. (2024). Proteolytic cleavage of the TGFβ co-receptor CD109 changes its conformation, resulting in protease inhibition via activation of its thiol ester, and dissociation from the cell membrane. FEBS journal, 291(14), 3169-3190. https://doi.org/10.1111/febs.17128

Lykke-Andersen, S., Rouvière, J. O., Schmid, M., Gockert, M. & Jensen, T. H. (2024). Protocol for generating customizable and reproducible plots of sequencing coverage data using the seqNdisplayR package. STAR Protocols, 5(2), Article 102960. https://doi.org/10.1016/j.xpro.2024.102960

Wittig, N. K., Pedersen, C., Palle, J., Østergaard, M., Christensen, T. E. K., Kahnt, M., Sadetskaia, A., Thomsen, J. S., Brüel, A. & Birkedal, H. (2024). Protocols for preparation of biomineralized samples for computed tomography. Tomography of Materials and Structures, 5, Article 100027. https://doi.org/10.1016/j.tmater.2024.100027

Camenisch, G.-M., Wili, N., Jeschke, G. & Ernst, M. (2024). Pulsed dynamic nuclear polarization: a comprehensive Floquet description. Physical Chemistry Chemical Physics, 26(25), 17666-17683. https://doi.org/10.1039/d4cp01788a

Ober, V. T., Githure, G. B., Santos, Y. V., Becker, S., Munoz, G. M., Basquin, J., Schwede, F., Lorentzen, E. & Boshart, M. (2024). Purine nucleosides replace cAMP in allosteric regulation of PKA in trypanosomatid pathogens. eLife, 12, Article RP91040. https://doi.org/10.7554/eLife.91040

Petersen, H. I., Deskur, H., Rudra, A., Ørberg, S. B., Krause-Jensen, D. & Sanei, H. (2024). Pyrolysis of macroalgae: Insight into product yields and biochar morphology and stability. International Journal of Coal Geology, 286, Article 104498. https://doi.org/10.1016/j.coal.2024.104498

Holland, B., Alsen, P., Nytoft, H. P., Rudra, A., Sanei, H. & Petersen, H. I. (2024). Quality and composition of Lower Cretaceous carbonate source rocks and seepage oils in the Belize Basin, southern Belize, Central America. International Journal of Coal Geology, 285, Article 104478. https://doi.org/10.1016/j.coal.2024.104478

Vara-Vela, A. L., Rojas Benavente, N., Nielsen, O. K., Nascimento, J. P., Alves, R., Gavidia-Calderon, M. & Karoff, C. (2024). Quantifying Methane Emissions Using Satellite Data: Application of the Integrated Methane Inversion (IMI) Model to Assess Danish Emissions. Remote Sensing, 16(23), Article 4554. https://doi.org/10.3390/rs16234554

McPherson, L., Badger, J., Fertitta, K., Gordanier, M., Nemeth, C. & Bejder, L. (2024). Quantifying the abundance and survival rates of island-associated spinner dolphins using a multi-state open robust design model. Scientific Reports, 14(1), 14764. Article 14764. https://doi.org/10.1038/s41598-024-64220-3

Høyer, N. M. (2024). Quantum Dynamics of Molecules Through Quasi-Direct Methods. [PhD dissertation, Aarhus University].

Rivera-Dean, J., Stammer, P., Maxwell, A. S., Lamprou, T., Pisanty, E., Tzallas, P., Lewenstein, M. & Ciappina, M. F. (2024). Quantum-optical analysis of high-order harmonic generation in H2+ molecules. Physical Review A, 109(3), Article 033706. https://doi.org/10.1103/PhysRevA.109.033706

Lund, M. M. (2024). Quantum State Manipulation in Temporal Modes of Light. [PhD dissertation, Aarhus University]. Aarhus Universitet.

Høyer, N. M. & Christiansen, O. (2024). Quasi-direct Quantum Molecular Dynamics: The Time-Dependent Adaptive Density-Guided Approach for Potential Energy Surface Construction. Journal of Chemical Theory and Computation, 20(2), 558-579. https://doi.org/10.1021/acs.jctc.3c00962

Caragiannis, I. & Kalantzis, G. (2024). Randomized learning-augmented auctions with revenue guarantees. In K. Larson (Ed.), Proceedings of the 33rd International Joint Conference on Artificial Intelligence (IJCAI) (pp. 2687-2694). International Joint Conferences on Artificial Intelligence.

Kravchenko, A. V., Makeeva, D. V., Tumkin, I. & Kalinichev, A. V. (2024). Rapid analysis and classification of blue ballpoint pen inks using high-performance thin-layer chromatography and digital color analysis. Talanta, 275, Article 126117. https://doi.org/10.1016/j.talanta.2024.126117

Galata, S., Walkington, I., Lane, T. P., Kiriakoulakis, K. & Dick, J. (2024). Rapid detection of microfibres in environmental samples using open-source visual recognition models. Journal of Hazardous Materials, 480, Article 135956. https://doi.org/10.1016/j.jhazmat.2024.135956

Wang, T. & Berenbrink, M. (2024). Rapid restoration of intracellular pH in erythrocytes protects oxygen transport. Acta Physiologica, 240(10), Article e14218. https://doi.org/10.1111/apha.14218

Vang, M. Ø. (2024). Rapid surface nuclear magnetic resonance mapping for hydrogeological investigations. [PhD dissertation, Aarhus University].

Nooteboom, S. W., Okholm, K. R., Lamberti, V., Oomen, B., Sutherland, D. S. & Zijlstra, P. (2024). Rate-Engineered Plasmon-Enhanced Fluorescence for Real-Time Microsecond Dynamics of Single Biomolecules. Nano Letters, 24(37), 11641-11647. https://doi.org/10.1021/acs.nanolett.4c03220

Swann, A. F. (2024). R. Bielawski and C. Peternell, Hilbert schemes, commuting matrices and hyperkähler geometry, J. Lond. Math. Soc. (2) 106 (2022), no. 2, 734-755. MathSciNet, Article MR4477203.

Ma, W., Egger, M. K., Pavlogiannis, A., Li, Y. & Karras, P. (2024). Reachability-Aware Fair Influence Maximization. In W. Zhang, Z. Yang, X. Wang, A. Tung, Z. Zheng & H. Guo (Eds.), Web and Big Data - 8th International Joint Conference, APWeb-WAIM 2024, Proceedings: 8th International Joint Conference, APWeb-WAIM 2024, Jinhua, China, August 30 – September 1, 2024, Proceedings, Part III (pp. 342-359). BMJ, Springer Nature. https://doi.org/10.1007/978-981-97-7238-4_22

Maia Neto, F., Snellings, R. & Skibsted, J. (2024). Reactivity of aqueous carbonated cement pastes: Effect of chemical composition and carbonation conditions. Journal of CO2 Utilization, 89, Article 102970. https://doi.org/10.1016/j.jcou.2024.102970

Sarneel, J. M., Hefting, M. M., Sandén, T., van den Hoogen, J., Routh, D., Adhikari, B. S., Alatalo, J. M., Aleksanyan, A., Althuizen, I. H. J., Alsafran, M. H. S. A., Atkins, J. W., Augusto, L., Aurela, M., Azarov, A. V., Barrio, I. C., Beier, C., Bejarano, M. D., Benham, S. E., Berg, B. ... Keuskamp, J. A. (2024). Reading tea leaves worldwide: Decoupled drivers of initial litter decomposition mass-loss rate and stabilization. Ecology Letters, 27(5), e14415. Article e14415. https://doi.org/10.1111/ele.14415

Labriet, Q. & Poulain d'Andecy, L. (2024). Realisations of Racah algebras using Jacobi operators and convolution identities. Advances in Applied Mathematics, 153, Article 102620. https://doi.org/10.1016/j.aam.2023.102620

Larsen, J. R., Christensen-Dalsgaard, J., Lundkvist, M. S., Rørsted, J. L., Winther, M. L. & Kjeldsen, H. (2024). Realising efficient computation of individual frequencies for red-giant models: The truncated scanning method. Astronomy and Astrophysics, 690, Article A394. https://doi.org/10.1051/0004-6361/202449207

Li, Y., Bedding, T. R., Huber, D., Stello, D., van Saders, J., Zhou, Y., Crawford, C. L., Joyce, M., Li, T., Murphy, S. J. & Sreenivas, K. R. (2024). Realistic Uncertainties for Fundamental Properties of Asteroseismic Red Giants and the Interplay between Mixing Length, Metallicity, and ν max. Astrophysical Journal, 974, Article 77. https://doi.org/10.3847/1538-4357/ad6c3e

Hu, J., Zhang, Y. & Dong, M. (2024). Recent Advances in Layered Double Hydroxides Membranes: Insights into Multiple Mass Transport. Advanced Functional Materials, 34(14), Article 2312452. https://doi.org/10.1002/adfm.202312452

Duncan, A. L., Gao, Y., Haanappel, E., Im, W. & Chavent, M. (2024). Recent Advances in Modeling Membrane β-Barrel Proteins Using Molecular Dynamics Simulations: From Their Lipid Environments to Their Assemblies. In R. Ieva (Ed.), Transmembrane β-Barrel Proteins (Vol. 2778, pp. 311-330). Humana Press. https://doi.org/10.1007/978-1-0716-3734-0_19

Zhang, L., Zhu, C., Zhao, J., Scimeca, L., Dong, M., Liu, R., Jia, Y. & Xu, Z. P. (2024). Recent Advances in Nanomodulators for Augmenting Cancer Immunotherapy in Cold Tumors: Insights from Drug Delivery to Drug-Free Strategies. Advanced Functional Materials, 34(18), Article 2311914. https://doi.org/10.1002/adfm.202311914

Hu, J. & Dong, M. (2024). Recent advances in two-dimensional nanomaterials for sustainable wearable electronic devices. Journal of Nanobiotechnology, 22, Article 63. https://doi.org/10.1186/s12951-023-02274-7

Ma, Y., Yu, Z. & Valero, J. (2024). Recent Advances on Catenanes and Rotaxanes Made of DNA. In E. M. Pérez (Ed.), Mechanically Interlocked Materials: Polymers, Nanomaterials, MOFs, and more (pp. 195-216). Wiley.

Bofill-De Ros, X. & Vang Ørom, U. A. (2024). Recent progress in miRNA biogenesis and decay. RNA Biology, 21(1), 1-8. https://doi.org/10.1080/15476286.2023.2288741

Davoli, M., Kuemmerle, T., Monsarrat, S., Crees, J., Cristiano, A., Pacifici, M. & Svenning, J. C. (2024). Recent Sociocultural Changes Reverse the Long-Term Trend of Declining Habitat Availability for Large Wild Mammals in Europe. Diversity and Distributions, 30(12), Article e13921. https://doi.org/10.1111/ddi.13921

Garde, H. & Vogelius, M. (2024). Reconstruction of cracks in Calderón's inverse conductivity problem using energy comparisons. SIAM Journal on Mathematical Analysis, 56(1), 727-745. https://doi.org/10.1137/23M1572416

Thurstan, R. H., McCormick, H., Preston, J., Ashton, E. C., Bennema, F. P., Cetinić, A. B., Brown, J. H., Cameron, T. C., da Costa, F., Donnan, D. W., Ewers, C., Fortibuoni, T., Galimany, E., Giovanardi, O., Grancher, R., Grech, D., Hayden-Hughes, M., Helmer, L., Jensen, K. T. ... zu Ermgassen, P. S. E. (2024). Records reveal the vast historical extent of European oyster reef ecosystems. Nature Sustainability, 7(12), 1719-1729. Article 105375. https://doi.org/10.1038/s41893-024-01441-4

Laursen, M. R., Xu, W. & Møller, A. (2024). Reducing Static Analysis Unsoundness with Approximate Interpretation. Proceedings of the ACM on Programming Languages , 8, 1165-1188. https://doi.org/10.1145/3656424

Nagy, G., Hoffmann, S. V., Jones, N. C. & Grubmüller, H. (2024). Reference Data Set for Circular Dichroism Spectroscopy Comprised of Validated Intrinsically Disordered Protein Models. Applied Spectroscopy, 78(9), 897-911. https://doi.org/10.1177/00037028241239977

Asmussen, S. & Glynn, P. W. (2024). Refined behaviour of a conditioned random walk in the large deviations regime. Bernoulli, 30(1), 371-387. https://doi.org/10.3150/23-BEJ1601

Poppe, R., Roth, N., Neder, R. B., Palatinus, L., Iversen, B. B. & Hadermann, J. (2024). Refining short-range order parameters from the three-dimensional diffuse scattering in single-crystal electron diffraction data. IUCrJ, 11(Pt 1), 82-91. https://doi.org/10.1107/S2052252523010254

Yang, Y., Zhao, R., Liu, C., Qi, Y., Hu, D., Si, D. & Chen, Y. P. (2024). Regulating crystallinity to balance the electrochemical performance of cobalt-tin oxide composite anodes for sodium-ion batteries. New Journal of Chemistry, 48(38), 16657-16668. https://doi.org/10.1039/d4nj02152e

Ernstsen, C. V., Ranieri, M., Login, F. H., Mahmoud, I. K., Therkildsen, J. R., Valenti, G., Praetorius, H., Nørregaard, R. & Nejsum, L. N. (2024). Regulation of renal aquaporin water channels in acute pyelonephritis. American journal of physiology. Cell physiology, 326(5), C1451-C1461. https://doi.org/10.1152/ajpcell.00308.2023

Jadhav, N., Bhattacharya, S., Vogt, D., Aluma, Y., Tonessen, P., Prabhakara, A., Kumar, S., Gero, S., Wood, R. J. & Gil, S. (2024). Reinforcement learning-based framework for whale rendezvous via autonomous sensing robots. Science Robotics, 9(95), Article eadn7299. https://doi.org/10.1126/scirobotics.adn7299

Maxwell, A. S. & Madsen, L. B. (2024). Relativistic and spin-orbit dynamics at nonrelativistic intensities in strong-field ionization. Physical Review A, 110(3), Article 033108. https://doi.org/10.1103/PhysRevA.110.033108

Egger, M. K., Ma, W., Mottin, D., Karras, P., Bordino, I., Gullo, F. & Anagnostopoulos, A. (2024). ReliK: A Reliability Measure for Knowledge Graph Embeddings. In WWW '24 : Proceedings of the ACM Web Conference (pp. 2009-2019). Association for Computing Machinery. https://doi.org/10.1145/3589334.3645430

Tylmann, K., Grinbauma, I., Kasula, M., Greenwood, S. & Piotrowski, J. A. (2024). Relikty form glacjalnych w rzeźbie dna południowej części Morza Bałtyckiego (Relicts of glacial landforms at the bottom of the southern Baltic Sea). 149. Abstract from XIII Assembly of the Association of Polish Geomorphologists, Lodz, Poland.

Zhu, C., Liu, C., Wu, Q., Sheng, T., Zhou, R., Ren, E., Zhang, R., Zhao, Z., Shi, J., Shen, X., Sun, Z., Mao, Z., He, K., Zhang, L., Ding, Y., Gu, Z., Wang, W. & Li, H. (2024). Remolding the tumor microenvironment by bacteria augments adoptive T cell therapy in advanced-stage solid tumors. Signal Transduction and Targeted Therapy, 9(1), Article 307. https://doi.org/10.1038/s41392-024-02028-3

Magneville, C., Claverie, T. & Villéger, S. (2024). Remote video surveys unveil the diurnal variability of trophic-based processes by fishes on coral reefs. Coral Reefs, 43(2), 253-263. https://doi.org/10.1007/s00338-023-02436-x

Richardson, L., Magneville, C., Grange, L., Shepperson, J., Skov, M., Hoey, A. & Heenan, A. (2024, Jun). Reorganisation following disturbance: multi trait-based methods in R.

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