Publications

Follow the latest publications from the Faculty of Natural Sciences.

Rumeu, B., Devoto, M., Traveset, A., Olesen, J. M., Vargas, P., Nogales, M. & Heleno, R. (2017). Predicting the consequences of disperser extinction: richness matters the most when abundance is low. Functional Ecology, 31(10), 1910-1920. https://doi.org/10.1111/1365-2435.12897

Cordier, T., Esling, P., Lejzerowicz, F., Visco, J., Ouadahi, A., Martins, C., Cedhagen, T. & Pawlowski, J. (2017). Predicting the Ecological Quality Status of Marine Environments from eDNA Metabarcoding Data Using Supervised Machine Learning. Environmental Science & Technology, 51(16), 9118-9126. https://doi.org/10.1021/acs.est.7b01518

Harrison, E. T., Weidner, T., Castner, D. G. & Interlandi, G. (2017). Predicting the orientation of protein G B1 on hydrophobic surfaces using Monte Carlo simulations. Biointerphases, 12(2), Article 02D401. https://doi.org/10.1116/1.4971381

Weidner, T. (2017). Predicting the structure and orientation of adsorbed peptides with molecular simulations. Abstract from 253rd ACS National Meeting, San Francisco, United States.

Zhang, J. & Mølmer, K. (2017). Prediction and retrodiction with continuously monitored Gaussian states. Physical Review A, 96(6), Article 062131. https://doi.org/10.1103/PhysRevA.96.062131

Grelet, C., Vanlierde, A., Dehareng, F., Froidmont, E. & GplusE Consortium (2017). Prediction of energy status of dairy cows using MIR milk spectra. In Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (Vol. 23, pp. 403-403). Wageningen Academic Publishers.

Grelet, C., Vanlierde, A., Salavati, M., Hostens, M., Foldager, L., Dehareng, F. & GplusE Consortium (2017). Prediction of energy status of dairy cows using MIR milk spectra. Abstract from ICAR 2017, United Kingdom. http://www.icar.org/wp-content/uploads/2017/06/1.-Clement-Grelet.pdf

Søndergaard, D., Nielsen, S., Pedersen, C. N. S. & Besenbacher, S. (2017). Prediction of Primary Tumors in Cancers of Unknown Primary. Journal of integrative bioinformatics, 14(2). https://doi.org/10.1515/jib-2017-0013

Weidner, T. (2017). Preface: In Focus Issue on Protein Structures at Biointerfaces. Biointerphases, 12(2), 02D101-2. Article 1934-8630/2017/12(2)/02D101/2. https://doi.org/10.1116/1.4987130

Du, X., Ooi, B. C., Özsu, M. T., Cui, B., Chen, L., Jensen, C. S. & Shahabi, C. (2017). Preface. Lecture Notes in Computer Science, 10367 LNCS, V-VI. https://doi.org/10.1007/978-3-319-63564-4

Heymann, M., Gramelsberger, G. & Mahony, M. (Eds.) (2017). Preface. In Cultures of Prediction in Atmospheric and Climate Science: Epistemic and Cultural Shifts in Computer-based Modelling and Simulation (pp. ix). Taylor and Francis Inc.. https://doi.org/10.4324/9781315406282

Steinbrecher, A., Janke, J., Poy, M. N., Oxvig, C. & Pischon, T. (2017). Pregnancy-Associated Plasma Protein-A2 and Anthropometry, Lifestyle, and Biochemical Factors in a Human Adult Population. Scientific Reports, 7(1), Article 10455. https://doi.org/10.1038/s41598-017-10629-y

Svenning, J. C. & Faurby, S. (2017). Prehistoric and historic baselines for trophic rewilding in the Neotropics. Perspectives in Ecology and Conservation, 15(4), 282-291. https://doi.org/10.1016/j.pecon.2017.09.006

Hajdas, I., Lindroos, A., Heinemeier, J., Ringbom, A., Marzaioli, F., Terrasi, F., Passariello, I., Capano, M., Artioli, G., Addis, A., Secco, M., Michalska, D., Czernik, J., Goslar, T., Hayen, R., Van Strydonck, M., Fontaine, L., Boudin, M., Maspero, F. ... Guibert, P. (2017). Preparation and Dating of Mortar Samples—Mortar Dating Inter-Comparison Study (MODIS). Radiocarbon: An International Journal of Cosmogenic Isotope Research, 59(6), 1845-1858. https://doi.org/10.1017/RDC.2017.112

Hjuler, C. T., Maolanon, N. N., Sauer, J., Stougaard, J., Thygesen, M. B. & Jensen, K. J. (2017). Preparation of glycoconjugates from unprotected carbohydrates for protein-binding studies. Nature Protocols, 12(11), 2411-2422. https://doi.org/10.1038/nprot.2017.109

Madsen, M., Christensen , R. S., Krissanaprasit, A., Bakke, M. R., Riber, C. F., Nielsen , K. S., Zelikin, A. N. & Gothelf, K. V. (2017). Preparation, single-molecule manipulation and energy transfer investigation of a polyfluorene-graft-DNA polymer. Chemistry: A European Journal, 23(44), 10511-10515. https://doi.org/10.1002/chem.201702780

Themeßl, N., Hekker, S. & Elsworth, Y. (2017). Presence of mixed modes in red giants in binary systems. EPJ Web of Conferences, 160, Article 05009. https://doi.org/10.1051/epjconf/201716005009

Davidsson, S., Carlsson, J., Mölling, P., Gashi, N., Andrén, O., Andersson, S.-O., Brzuszkiewicz, E., Poehlein, A., Al-Zeer, M. A., Brinkmann, V., Scavenius, C., Nazipi, S., Söderquist, B. & Brüggemann, H. (2017). Prevalence of Flp Pili-Encoding Plasmids in Cutibacterium acnes Isolates Obtained from Prostatic Tissue. Frontiers in Microbiology, 8(NOV), 2241. Article 2241. https://doi.org/10.3389/fmicb.2017.02241

Larsen, F., Jensen, N., Autzen, J. K., Kongsfelt, I. B. & Pedersen, L. (2017). Primary Brain Calcification Causal PiT2 Transport-Knockout Variants can Exert Dominant Negative Effects on Wild-Type PiT2 Transport Function in Mammalian Cells. Journal of Molecular Neuroscience, 61(2), 215-220. https://doi.org/10.1007/s12031-016-0868-7

Raunbak , M., Zeyer, T., Zhu, K. & Greiner, M. (2017). Principal Mismatch Patterns Across a Simplified Highly Renewable European Electricity Network. Energies, 10(12), Article 1934. https://doi.org/10.3390/en10121934

Suravajhala, P. & Benso, A. (2017). Prioritizing single-nucleotide polymorphisms and variants associated with clinical mastitis. Advances and Applications in Bioinformatics and Chemistry, 10(1), 57-64. Article S123604. https://doi.org/10.2147/AABC.S123604

Hallgren, P. A., Orlandi, C. & Sabelfeld, A. (2017). PrivatePool: Privacy-Preserving Ridesharing. In Proceedings - IEEE 30th Computer Security Foundations Symposium, CSF 2017 (pp. 276-291). Article 8049726 IEEE Press. https://doi.org/10.1109/CSF.2017.24

Marker, P. A., Vilhelmsen, T. N., Foged, N., Wernberg, T., Auken, E. & Bauer-Gottwein, P. (2017). Probabilistic predictions using a groundwater model informed with airborne EM data. Advances in Water Resources, 103, 86-98. https://doi.org/10.1016/j.advwatres.2017.03.002

Reardon, H., Iversen, B. B., Blichfeld, A. B., Jørgensen, L. R. & Zeuthen, C. B. (2017). Probing Amorphous Components in High Temperature TE Materials by in situ Total Scattering and the Pair Distribution Function (PDF) Method. Abstract from 2017ICT - 36TH International Conference on Thermoelectrics, Pasadena, California, United States.

Langley, G. W., Brinko, A., Munzel, M., Walport, L. J., Schofield, C. J. & Hopkinson, R. J. (2017). Probing the Charge and Conformational Requirements of JmjC Demethylases. The FASEB Journal, 31(1-supplement).

Mathur, S., García, R. A., Huber, D., Regulo, C., Stello, D., Beck, P. G., Houmani, K. & Salabert, D. (2017). Probing the Deep End of the Milky Way with New Oscillating Kepler Giants. EPJ Web of Conferences, 160, Article 05001. https://doi.org/10.1051/epjconf/201716005001

Sedghamiz, E., Nagy, B. & Jensen, F. (2017). Probing the Importance of Charge Flux in Force Field Modeling. Journal of Chemical Theory and Computation, 13(8), 3715-3721. https://doi.org/10.1021/acs.jctc.7b00296

Reardon, H., Iversen, B. B., Blichfeld, A. B., Broge, N. L. N. & Jørgensen, L. R. (2017). Probing the Subtle Structure Modifications of Thermoelectric Materials by Variable Temperature Total Scattering. Abstract from To.Sca.Lake 2.0: Total Scattering for Nanotechnology on the Como Lake, Como, Italy.

Savelyev, E., Amini, K., Brauße, F., Berrah, N., Bomme, C., Brouard, M., Burt, M., Christensen, L., Düsterer, S., Erk, B., Höppner, H., Kierspel, T., Krecinic, F., Lauer, A., Lee, J. W. L., Müller, M., Müller, E., Mullins, T., Redlin, H. ... Boll, R. (2017). Probing the UV-Induced Photodissociation of CH₃I and C₆H₃F₂I with Femtosecond Time-Resolved Coulomb Explosion Imaging at FLASH. ArXiv. https://arxiv.org/pdf/1708.00676.pdf

Wolf, T. J. A., Myhre, R. H., Cryan, J. P., Coriani, S., Squibb, R. J., Battistoni, A., Berrah, N., Bostedt, C., Bucksbaum, P., Coslovich, G., Feifel, R., Gaffney, K. J., Grilj, J., Martinez, T. J., Miyabe, S., Moeller, S. P., Mucke, M., Natan, A., Obaid, R. ... Gühr, M. (2017). Probing ultrafast ππ*/nπ* internal conversion in organic chromophores via K-edge resonant absorption. Nature Communications, 8(1), Article 29. https://doi.org/10.1038/s41467-017-00069-7

Philippsen, B. (2017). Problems in radiocarbon dating. In M. Sørensen & K. B. Pedersen (Eds.), Problems in palaeolithic and mesolithic research (pp. 105-117). University of Copenhagen.

Walther, R., Rautio, J. & Zelikin, A. N. (2017). Prodrugs in medicinal chemistry and enzyme prodrug therapies. Advanced Drug Delivery Reviews, 118(september), 65-77. https://doi.org/10.1016/j.addr.2017.06.013

Bak, E. N., Zafirov, K., Merrison, J. P., Jensen, S. J. K., Nornberg, P., Gunnlaugsson, H. P. & Finster, K. (2017). Production of reactive oxygen species from abraded silicates. Implications for the reactivity of the Martian soil. Earth and Planetary Science Letters, 473, 113-121. https://doi.org/10.1016/j.epsl.2017.06.008

Jensen, M. M., Madsen, R. B., Becker, J., Iversen, B. B. & Glasius, M. (2017). Products of hydrothermal treatment of lignin and the importance of ortho-directed repolymerization reactions. Journal of Analytical and Applied Pyrolysis, 126, 371-379. https://doi.org/10.1016/j.jaap.2017.05.009

Villesen, P. & Stride Nielsen, L. (2017). Profiling of cocaine using ratios of GC-MS peaks. Scientific Reports, 7(1), 11646. Article 11646. https://doi.org/10.1038/s41598-017-12042-x

Seitz, A. K., Christensen, L. L., Christensen, E., Faarkrog, K., Ostenfeld, M. S., Hedegaard, J., Nordentoft, I., Nielsen, M. M., Palmfeldt, J., Thomson, M., Jensen, M. T. S., Nawroth, R., Maurer, T., Orntoft, T. F., Jensen, J. B., Damgaard, C. K. & Dyrskjot, L. (2017). Profiling of long non-coding RNAs identifies LINC00958 and LINC01296 as candidate oncogenes in bladder cancer. Scientific Reports, 7(1), Article 395. https://doi.org/10.1038/s41598-017-00327-0

Rasmussen, T. A. & Merritt, T. R. (2017). Projectables. In S. M.A., R. A., J. P. & L. P. (Eds.), CAADRIA 2017 - 22nd International Conference on Computer-Aided Architectural Design Research in Asia: Protocols, Flows and Glitches (pp. 757-766). The Association for Computer-Aided Architectural Design Research in Asia (CAADRIA).

Michel, E., Belkacem, K., Samadi, R., Assis Peralta, R. D., Renié, C., Abed, M., Lin, G., Christensen-Dalsgaard, J., Houdek, G., Handberg, R., Gizon, L., Burston, R., Nagashima, K., Pallé, P., Poretti, E., Rainer, M., Mistò, A., Panzera, M. R. & Roth, M. (2017). Promoting access to and use of seismic data in a large scientific community. SpaceInn data handling and archiving. E P J Web of Conferences, 160, 1011. Article 01011. https://doi.org/10.1051/epjconf/201716001011

Karbyshev, A., Bjørner, N., Itzhaky, S., Rinetzky, N. & Shoham, S. (2017). Property-directed inference of universal invariants or proving their absence. Journal of the ACM, 64(1), 7:1-7:33. Article 7. https://doi.org/10.1145/3022187

Haikka, P., Kubo, Y., Bienfait, A., Bertet, P. & Mølmer, K. (2017). Proposal for detecting a single electron spin in a microwave resonator. Physical Review A, 95(2), Article 022306. https://doi.org/10.1103/PhysRevA.95.022306

Jank, T., Belyi, Y., Wirth, C., Rospert, S., Hu, Z., Dengjel, J., Tzivelekidis, T., Andersen, G. R., Hunte, C., Schlosser, A. & Aktories, K. (2017). Protein glutaminylation is a yeast-specific posttranslational modification of elongation factor 1A. Journal of Biological Chemistry, 292(39), 16014-16023. https://doi.org/10.1074/jbc.M117.801035

Madsen, J. K. (2017). Protein-surfactant interactions in detergents and pharmaceuticals.

Thøgersen, J., Coletta, A., Keiding, S. R., Jensen, F., Jones, N. C., Hoffmann, S. V. & Jensen, S. K. (2017). Protonation of Aqueous Alanine by Photoionization of Water. Physical Chemistry Chemical Physics, 19(2), 1560-1570. https://doi.org/10.1039/C6CP07235F

Olivarius, M., Weibel, R., Friis, H., Boldreel, L. O., Keulen, N. & Thomsen, T. B. (2017). Provenance of the Lower Triassic Bunter Sandstone Formation: implications for distribution and architecture of aeolian vs. fluvial reservoirs in the North German Basin. Basin Research, 29(S1), 113-130. https://doi.org/10.1111/bre.12140

Grønbæk, J. E., Korsgaard, H., Petersen, M. G., Henriksen Birk, M. & Krogh, P. G. (2017). Proxemic Transitions: Designing Shape-Changing Furniture for Informal Meetings. In CHI 2017 - Proceedings of the 2017 ACM SIGCHI Conference on Human Factors in Computing Systems: Explore, Innovate, Inspire (pp. 7029-7041) https://doi.org/10.1145/3025453.3025487

Liu, S. & Hansen, M. M. (2017). PSMC (pairwise sequentially Markovian coalescent) analysis of RAD (restriction site associated DNA) sequencing data. Molecular Ecology Resources, 17(4), 631-641. https://doi.org/10.1111/1755-0998.12606

Smalley, B., Antoci, V., Holdsworth, D. L., Kurtz, D. W., Murphy, S. J., De Cat, P., Anderson, D. R., Catanzaro, G., Cameron, A. C., Hellier, C., Maxted, P. F. L., Norton, A. J., Pollacco, D., Ripepi, V., West, R. G. & Wheatley, P. J. (2017). Pulsation versus metallicism in Am stars as revealed by LAMOST and WASP. Royal Astronomical Society. Monthly Notices, 465(3), 2662-2670. https://doi.org/10.1093/mnras/stw2903

Palani, R. S. (2017). Pulse Design in Solid-State Nuclear Magnetic Resonance: Study and Design of Dipolar Recoupling Experiments in Spin-½ Nuclei. Aarhus Universitet.

Caresana, M., Ballerini, M., Ulfbeck, D. G., Hertel, N., Manessi, G. P. & Sogaard, C. (2017). Pulsed neutron fields measurements around a synchrotron storage ring. E P J Web of Conferences, 153, Article 01007. https://doi.org/10.1051/epjconf/201715301007

Vogiatzis, K. D., Ma, D., Olsen, J., Gagliardi, L. & Jong, W. D. (2017). Pushing configuration-interaction to the limit: Towards massively parallel MCSCF calculations. The Journal of Chemical Physics, 147(18), 184111, 1-13. Article 184111. https://doi.org/10.1063/1.4989858

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