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Faculty of Natural Sciences

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Follow the latest publications from the Faculty of Natural Sciences.

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Leemreize, H., Birkbak, M., Froelich, S., Kenesei, P., Almer, J. D., Stock, S. R. & Birkedal, H. (2014). Diffraction computed tomography reveals the inner structure of complex biominerals. In Developments in X-Ray Tomography IX SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2061580

Haack, S., Tanderup, K., Kallehauge, J., Lindegaard, J. C., Morre-Pedersen, E. & Jespersen, S. N. (2014). Diffusion Weighted MRI for Radiotherapy Treatment of Locally Advanced Cervical Cancer – Treatment Response Assessment Using Different Segmentation Methods. Abstract from ISMRM-ESMRMB 2014, Milano, Italy.

Britz, D. & Strutwolf, J. (2014). Digital Simulation of Electrochemistry at Microelectrodes. In K. Fong Lei (Ed.), Microelectrodes: Techniques, Structures for Biosensing and Potential Applications (2014 ed., pp. 1-85). Nova Science Publishers.

Kristensen, K., Cui, T., Zhang, H., Gold, A., Glasius, M. & Surratt, J. D. (2014). Dimers in α-pinene secondary organic aerosol: effect of hydroxyl radical, ozone, relative humidity and aerosol acidity. Atmospheric Chemistry and Physics, 14(8), 4201-4218. https://doi.org/10.5194/acp-14-4201-2014

Cresswell, G., Lund-Hansen, L. C. & Nielsen, M. H. (2014). Dipole vortices in the Great Australian Bight. Marine and Freshwater Research, 66(2), 135-144. https://doi.org/10.1071/MF13305

Glombitza, C., Pedersen, J., Røy, H. & Jørgensen, B. B. (2014). Direct analysis of volatile fatty acids in marine sediment porewater by two-dimensional ion chromatography-mass spectrometry. Limnology and Oceanography: Methods, 12, 455-468. https://doi.org/10.4319/lom.2014.12.455

Ferapontova, E., Bonamore, A., Boffi, A. & Lopes, P. (2014). Direct bioelectrocatalysis of NADH oxidation by Escherichia coli flavohemoglobin at promoter - modified electrodes. Poster session presented at 65th Annual Meeting of the International Society of Electrochemistry, Lausanne, Switzerland.

Lopes, P., Xu, M., Zhang, M., Zhou, T., Yang, Y., Wang, C. & Ferapontova, E. (2014). Direct Electrochemical and AFM Detection of Amyloid-beta Peptide Aggregation on Basal Plane HOPG. Abstract from 47th Heyrovsky Discussion, Prague, Czech Republic.

Lopes, P., Xu, M., Zhang, M., Zhou, T., Yang, Y., Wang, C. & Ferapontova, E. (2014). Direct electrochemical and AFM detection of amyloid-β peptide aggregation on basal plane HOPG. Nanoscale, 6(14), 7853-7857. https://doi.org/10.1039/C4NR02413C

Frisvad, J. R., Hachisuka, T. & Kjeldsen, T. K. (2014). Directional dipole model for subsurface scattering. A C M Transactions on Graphics, 34(1), Article 5. https://doi.org/10.1145/2682629

Frederiksen, M. & Sutherland, D. S. (2014). Direct modification of colloidal hole-masks for locally ordered hetero-assemblies of nanostructures over large areas. Nanoscale, 6(2), 731-735. https://doi.org/10.1039/C3NR03871H

Riley, J. M., Mazzola, F., Dendzik, M., Michiardi, M., Takayama, T., Bawden, L., Granerod, C., Leandersson, M., Balasubramanian, T., Hoesch, M., Kim, T. K., Takagi, H., Meevasana, W., Hofmann, P., Bahramy, M. S., Wells, J. W. & King, P. D. C. (2014). Direct observation of spin-polarized bulk bands in an inversion-symmetric semiconductor. Nature Physics, 10(11), 835-839. https://doi.org/10.1038/NPHYS3105

Tanaka, M., Morokuma, T., Itoh, R., Akitaya, H., Tominaga, N., Saito, Y., Stawarz, Ł., Tanaka, Y. T., Gandhi, P., Ali, G., Aoki, T., Contreras, C., Doi, M., Essam, A., Hamed, G., Hsiao, Y. C. E., Iwata, I., Kawabata, K. S., Kawai, N. ... Yoshii, T. (2014). Discovery of dramatic optical variability in SDSS J1100+4421: A peculiar radio-loud narrow-line Seyfert 1 galaxy? Astrophysical Journal Letters, 793(2), Article L26. https://doi.org/10.1088/2041-8205/793/2/L26

Dang, X.-H., Assent, I., Ng, R. T., Zimek, A. & Schubert, E. (2014). Discriminative features for identifying and interpreting outliers. In Proceedings, 2014 IEEE 30th International Conference on Data Engineering (ICDE) (pp. 88-99). Article 6816642 IEEE Computer Society Press. https://doi.org/10.1109/ICDE.2014.6816642

Mazzola, F., Polley, C. M., Miwa, J. A., Simmons, M. Y. & Wells, J. W. (2014). Disentangling phonon and impurity interactions in δ-doped Si(001). Applied Physics Letters, 104(17), Article 173108. https://doi.org/10.1063/1.4874651

Trelle, M. B., Dupont, D. M., Madsen, J. B., Andreasen, P. A. & Jørgensen, T. J. D. (2014). Dissecting the effect of RNA aptamer binding on the dynamics of plasminogen activator inhibitor 1 using hydrogen/deuterium exchange mass spectrometry. A C S Chemical Biology, 9(1), 174-182. https://doi.org/10.1021/cb400619v

Haikka, P. & Mølmer, K. (2014). Dissipative Landau-Zener level crossing subject to continuous measurement: Excitation despite decay. Physical Review A, 89, Article 052114. https://doi.org/10.1103/PhysRevA.89.052114

Yue, L. & Madsen, L. B. (2014). Dissociative ionization of H₂⁺ using intense femtosecond XUV laser pulses. Physical Review A, 90, Article 063408. https://doi.org/10.1103/PhysRevA.90.063408

Cheema, M. U., Damkier, H. H., Nielsen, J., Poulsen, E. T., Enghild, J. J., Fenton, R. A. & Praetorius, J. (2014). Distal Renal Tubules Are Deficient in Aggresome Formation and Autophagy upon Aldosterone Administration. PLoS One, 9(7), e101258. https://doi.org/10.1371/journal.pone.0101258

Misiewicz, T. M., Kraichak, E. & Rasmussen, C. (2014). Distance and habitat drive fine scale stingless bee (Hymenoptera: Apidae) community turnover across naturally heterogeneous forests in the western Amazon. Sociobiology, 61(4), 407-414. https://doi.org/10.13102/sociobiology.v61i4.407-414

Heinzen, E. L., Arzimanoglou, A., Brashear, A., Clapcote, S. J., Gurrieri, F., Goldstein, D. B., Jóhannesson, S. H., Mikati, M. A., Neville, B., Nicole, S., Ozelius, L. J., Poulsen, H., Schyns, T., Sweadner, K. J., van den Maagdenberg, A., Vilsen, B. & for the ATP1A3 Working Group: (2014). Distinct neurological disorders with ATP1A3 mutations. Lancet Neurology, 13(5), 503-514. https://doi.org/10.1016/S1474-4422(14)70011-0

Wüstenberg, M., Blunck, H., Grønbæk, K. & Kjærgaard, M. B. (2014). Distinguishing Electric Vehicles from Fossil-Fueled Vehicles with Mobile Sensing. In M. Gabor & R. Zhang (Eds.), 15th IEEE International Conference on Mobile Data Management (MDM): Proceedings (pp. 211 - 220 (vol.1)). IEEE. https://doi.org/10.1109/MDM.2014.32

Chung, K. M., Pettie, S. & Su, H. H. (2014). Distributed algorithms for the Lovász Local Lemma and graph coloring. In Proceedings of the Annual ACM Symposium on Principles of Distributed Computing (pp. 134-143). Association for Computing Machinery. https://doi.org/10.1145/2611462.2611465

Xue, H., Kelmann, P., Inati, S., Sørensen, T. S. & Hansen, M. (2014). Distributed Computing on Gadgetron: A new paradigm for MRI reconstruction: no. 1579. Poster session presented at Joint Annual Meeting ISMRM-ESMRMB, Milan, Italy. http://www.ismrm.org/14/program_files/TP05.htm

Stephansen, D. A., Nielsen, A. H., Hvitved-Jacobsen, T., Arias, C. A., Brix, H. & Vollertsen, J. (2014). Distribution of metals in fauna, flora and sediments of wet detention ponds and natural shallow lakes. Ecological Engineering, 66, 43-51. https://doi.org/10.1016/j.ecoleng.2013.05.007

Nielsen, L. B. (2014). Distribution of Oscinellinae (Diptera: Chloropidae) in the Danish landscape. Entomologiske Meddelelser, 82, 39-62.

Boström, C., Baden, S., Bockelmann, A.-C., Dromph, K. M., Frederiksen, S., Gustafsson, C., Krause-Jensen, D., Möller, T., Nielsen, S. L., Olesen, B., Olsen, J., Pihl, L. & Rinde, E. (2014). Distribution, structure and function of Nordic seagrass ecosystems: Implications for coastal management and conservation. Aquatic Conservation, 24(3), 410-434. https://doi.org/10.1002/aqc.2424

Gallego, I., Davidson, T. A., Jeppesen, E., Perez-Martinez, C., Fuentes-Rodriguez, F., Melchor, J. & Casas, J. (2014). Disturbance from pond management obscures local and regional drivers of assemblages of primary producers. Freshwater Biology, 59(7), 1406–1422. https://doi.org/10.1111/fwb.12354

Kock, A., Zuwala, K., Smith, A. A. A., Ruiz-Sanchis, P., Wohl, B. M., Tolstrup, M. & Zelikin, A. N. (2014). Disulfide reshuffling triggers the release of a thiol-free anti-HIV agent to make up fast-acting, potent macromolecular prodrugs. Chemical Communications, 50(93), 14498-500. https://doi.org/10.1039/c4cc04280h

Derczynski, L., Field, C. V. & Bøgh, K. S. (2014). DKIE: Open Source Information Extraction for Danish. In S. Wintner, M. Tadia & B. Babych (Eds.), Proceedings of the Demonstrations at the 14th Conference of the European Chapter of the Association for Computational Linguistics (pp. 61-64). Association for Computational Linguistics. http://anthology.aclweb.org/E/E14/E14-2.pdf#page=75

Madsen, P., Jensen, J., Labouriau, R., Christensen, O. F. & Sahana, G. (2014). DMU - A Package for Analyzing Multivariate Mixed Models in quantitative Genetics and Genomics. Poster session presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014#/activity/5tSDu1wL58

Madsen, P., Jensen, J., Labouriau, R., Christensen, O. F. & Sahana, G. (2014). DMU - A Package for Analyzing Multivariate Mixed Models in quantitative Genetics and Genomics. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014#/activity/5tSDu1wL58

Stougaard, M. & Ho, Y.-P. (2014). DNA-based nanosensors for next-generation clinical diagnostics via detection of enzyme activity. Expert Review of Molecular Diagnostics, 14(1), 1-3. https://doi.org/10.1586/14737159.2014.863151

de Almeida Campos, R. C., Kotlyar, A. & Ferapontova, E. (2014). DNA Biosensor Exploiting Direct DNA Immobilization onto Gold via Phosphorothioated dA Tags. Abstract from 47th Heyrovsky Discussion, Prague, Czech Republic.

Ke, Y., Ong, L. L., Sun, W., Song, J., Dong, MD., Shih, W. M. & Yin, P. (2014). DNA brick crystals with prescribed depths. Nature Chemistry, 6(11), 994-1002. https://doi.org/10.1038/nchem.2083

de Almeida Campos, R. C., Kotlyar, A. & Ferapontova, E. (2014). DNA-Mediated Electron Transfer in DNA Duplexes Tethered to Gold Electrodes via Phosphorothioated dA Tags. Langmuir, 30(40), 11853–11857. https://doi.org/10.1021/la502766g

Momeni, J., Farajzadeh, L., Madsen, L. B., Larsen, K., Panitz, F. & Bendixen, C. (2014). DNA Methylation Patterns in Two Tissues. In Proceeding of Plant & Animal Genome XXII: The International Conference on the Status of Plant & Animal Genome Research (pp. 235-235).

Momeni, J., Farajzadeh, L., Madsen, L. B., Larsen, K., Panitz, F. & Bendixen, C. (2014). DNA Methylation Patterns in Two Tissues. Poster session presented at International Plant & Animal Genome XXI , San Diego, United States.

Rosen, C. B., Tørring, T. & Gothelf, K. V. (2014). DNA-Templated Synthesis: in Nucleic Acid Nanotechnology, Nucleic Acids and Molecular Biology. In J. Kjems, E. Ferapontova & K. V. Gothelf (Eds.), Nucleic Acid Nanotechnology (Vol. 29). Springer. https://doi.org/10.1007/978-3-642-38815-6_7

Ketola, T., Kellermann, V. M., Loeschcke, V., López-Sepulcre, A. & Kristensen, T. N. (2014). Does environmental robustness play a role in fluctuating environments? Evolution, 68(2), 587-594. https://doi.org/10.1111/evo.12285

Nielsen, K. H. (2014). Dommedag som kold-krigs-konstruktion. Videnskab.dk. http://videnskab.dk/blog/dommedag-som-kold-krigs-konstruktion

Ulrik, M. G., Pujolar, J. M., Ferchaud, A.-L., Jacobsen, L. M. W., Als, T. D., Gagnaire, P. A., Frydenberg, J., Bøcher, P. K., Jonsson, B., Bernatchez, L. & Hansen, M. M. (2014). Do North Atlantic eels show parallel patterns of spatially varying selection? BMC Evolutionary Biology, 14, Article 138. https://doi.org/10.1186/1471-2148-14-138

Tur, C., Vigalondo, B., Nielsen, K. T., Olesen, J. M. & Traveset, A. (2014). Downscaling pollen-transport networks to the level of individuals. Journal of Animal Ecology, 83(1), 306–317. https://doi.org/10.1111/1365-2656.12130

Alex Shorter, K., Murray, M. M., Johnson, M., Moore, M. & Howle, L. E. (2014). Drag of suction cup tags on swimming animals: Modeling and measurement. Marine Mammal Science, 30(2), 726-746. https://doi.org/10.1111/mms.12083

Shimizu, K., Malmos, K., Spiegelhauer, S. A., Hinke, J., Holm, A. H., Pedersen, S. U., Daasbjerg, K. & Hinge, M. (2014). Durability of PEEK adhesive to stainless steel modified with aryldiazonium salts. International Journal of Adhesion and Adhesives, 51, 1-12. https://doi.org/10.1016/j.ijadhadh.2014.02.002

Stølting Brodal, G., Kaporis, A. C., Papadopoulos, A. N., Sioutas, S., Tsakalidis, K. & Tsichlas, K. (2014). Dynamic 3-sided planar range queries with expected doubly-logarithmic time. Theoretical Computer Science, 526(March), 58-74. https://doi.org/10.1016/j.tcs.2014.01.014

Favre, C., Jørgensen, J. K., Field, D., Brinch, C., Bisschop, S. E., Bourke, T. L., Hogerheijde, M. R. & Frieswijk, W. W. F. (2014). Dynamical structure of the inner 100 AU of the deeply embedded protostar IRAS 16293-2422. Astrophysical Journal, 790(1), Article 55. https://doi.org/10.1088/0004-637X/790/1/55

Golubeva, N. (2014). Dynamics and Thermodynamics of Molecular Machines.

Tamez-Hidalgo, P. (2014). Dynamics of bacterial endospores, and microbial activities in soils and sediments. Aarhus Faculty of Science and Technology.

Mikkelsen, K. (2014). Dynamics of macro- and microscopic neural networks.

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