Publications

Follow the latest publications from the Faculty of Natural Sciences.

Fukuda, K., Jensen, A. N. & Thomas, R. R. (2007). Computing Gröbner fans. Mathematics of Computation, 76(260), 2189-2212. https://doi.org/10.1090/S0025-5718-07-01986-2

Miltersen, P. B. & Sørensen, T. B. (2007). Computing Proper Equilibria of Zero-Sum Games. In Proceedings of the 5th International Conference on Computers and Games: Computers and Games (pp. 200-211). Springer. https://doi.org/10.1007/978-3-540-75538-8_18

Hansen, K. A. (2007). Computing Symmetric Boolean Functions by Circuits with Few Exact Threshold Gates. In G. Lin (Ed.), Computing and Combinatorics: 13th Annual International Conference, COCOON 2007, Banff, Canada, July 16-19, 2007. Proceedings (pp. 448-458). Springer. https://doi.org/10.1007/978-3-540-73545-8_44

Stissing, M., Mailund, T., Pedersen, C. N. S., Brodal, G. S. & Fagerberg, R. (2007). Computing the All-Pairs Quartet Distance on a Set of Evolutionary Trees. In Proceedings of the 5th Asia-Pacific Bioinformatics Conference (APBC) (pp. 91-100)

Stissing, M., Pedersen, C. N. S., Mailund, T. & Brodal, G. S. (2007). Computing the Quartet Distance between Evolutionary Trees of Bounded Degree. In Proceedings of the 5th Asia-Pacific Bioinformatics Conference (APBC) (pp. 101-110)

Bogart, T., Jensen, A. N., Speyer, D., Sturmfels, B. & Thomas, R. R. (2007). Computing tropical varieties. Journal of Symbolic Computation, 42(1-2), 54-73.

Nielsen, M. L. (2007). Conceptions of Object-oriented Terms: A Study in Progress. In Proceedings of WIP-PPIG 2007 Psychology of Programming Interest Group.

Brion, E., Mouritzen, A. S. & Mølmer, K. (2007). Conditional dynamics induced by new configurations for Rydberg dipole-dipole interactions. Physical Review A, 76, 022334.

Nielsen, A. E. B. & Mølmer, K. (2007). Conditional generation of path-entangled optical |N,0> + |0,N> states. Physical Review A, 75, 063803.

Cviklinski, J., Dantan, A., Ortalo, J. & Pinard, M. (2007). Conditional squeezing of an atomic alignment. Physical Review A, 76(033830).

Suski, A., Gorczyca, I., Franssen, G., Kamińska, A., Christensen, N. E., Svane, A., Suchocki, A., Lu, H., Schaff, W. J., Iliopoulos, E. & Georgakilas, A. (2007). Conduction band nonparabolicity and band filling in InN under hydrostatic pressure. Abstract from 7th International Conference of Nitride Semiconductors, Las Vegas, Nevada, United States.

Hansen, L. L., Madsen, B. E., Pedersen, K. & Wiuf, C. (2007). Conflicting results in SNP genotype assessment. BioTechniques, (43), 756-762.

Dong, M., Xu, S., Oliveira, C., Pedersen, J. S., Thiel, S., Besenbacher, F. & Vorup-Jensen, T. (2007). Conformational changes in mannan-binding lectin bound to ligand surfaces. The Journal of Immunology, 178, 3016-3022.

Dong, M., Xu, S., Oliveira, C. L. P., Pedersen, J. S., Thiel, S., Besenbacher, F. & Vorup-Jensen, T. (2007). Conformational changes in mannan-binding lectin bound to ligand surfaces. Journal of Immunology, 178(5), 3016-22.

Schiøtt, B., Celik, L. & Lund, J. D. D. (2007). Conformational dynamics of the estrogen receptor a: Influence of binding site structure on ptotein dynamics and biological function studied by MD simulations. Biochemistry, 46, 1743-1758.

Dupont, D. M., Jensen, J. K., Mathiasen, L., Blouse, G., Wind, T. & Andreasen, P. (2007). Conformational probes and activity regulators of plasminogen activator inhibitor-1, isolated from phage-displayed disulphide bridge-constrained peptide libraries. Poster session presented at XIth International Workshop on Molecular and Cellular Biology of Plasminogen Activation, Stockholm, Sweden.

Loeschcke, V. & Hoffmann, A. A. (2007). Consequences of heat hardening on a field fitness component in Drosophila depend on environmental temperature. The American Naturalist, 169(2), 175-183.

Vymazal, J., Greenway, M., Tonderski, K., Brix, H. & Mander, Ü. (2007). Constructed wetlands for wastewater treatment. In J. T. A. Verhoeven, B. Beltman, R. Bobbink & D. F. Whigham (Eds.), Ecological Studies, Wetlands and Natural Resource Management (Vol. 190, pp. 69-96)

Brabrand, C. (2007). Constructive Alignment for Teaching Model-Based Design for Concurrency: A Case Study on Implementing Alignment (Invited Paper for Invited Talk for TeaConc'07). In Proc. 2nd Workshop on Teaching Concurrency

Brønsted, J. (2007). Context Awareness. (1 ed.) Komialt - Vidennetværk for Pervasive Communication.

Surlyk, F. & Lykke-Andersen, H. (2007). Contourite drifts, moats and channels in the Upper Cretaceous chalk of the Danish Basin. Sedimentology, 54(2), 405-422.

Polerecky, L., Bachar, A., Schoon, R., Grinstein, M., Jørgensen, B. B., de Beer, D. & Jonkers, H. M. (2007). Contribution of Chloroflexus respiration to oxygen cycling in a hypersaline microbial mat from Lake Chiprana, Spain. Environmental Microbiology, 9(8), 2007-2024. https://doi.org/10.1111/j.1462-2920.2007.01317.x

Clo, E., Snyder, J., Ogilby, P. R. & Gothelf, K. V. (2007). Control and selectivity of photosensitized singlet oxygen production: challenges in complex biological systems. ChemBioChem, 8, 475-481.

Viftrup, S. (2007). Control of molecular rotation using pulsed lasers.

Holmegaard, L., Viftrup, S., Kumarappan, V., Bisgaard, C., Stapelfeldt, H., Hamilton, E. & Seideman, T. (2007). Control of rotational wave-packet dynamics in asymmetric top molecules. Physical Review A, 75, 051403(R).

Taylor, E. W., Leite, C., Campbell, H., Intanai, I. & Wang, T. (2007). Control of the heart in fish. In M. N. Fernandez, F. T. Rantin, M. L. Glass & B. G. Kapoor (Eds.), Fish respiration and environment (pp. 341-375). Science Publishers.

Lassen, K. B. (2007). Converting Workflow Nets to BPEL 1.1 in ProM: This is a conversion plugin for the process mining framework ProM.. Software .

Drewsen, M. (2007). Cooling, identification and spectroscopy of super-heavy element ions. The European Physical Journal D: Atomic, Molecular, Optical and Plasma Physics, 45(125127).

Clemensen, J. & Larsen, S. B. (2007). Cooperation versus Coordination: Using Real-time Telemedicine for Treatment at Home of Diabetic Footulcers. Journal of Telemedicine and Telecare, 13(Supplement 3), 29-32.

Fregenal, D., Førre, M., Henningsen, B., Horsdal, E. & Richards, D. (2007). Core-induced chaos in intrashell transitions. Physical Review A, 76, 053414.

Bünger, M. H., Foss, M., Erlacher, K., Hovgaard, M. B., Chevallier, J., Langdahl, B., Bünger, C., Birkedal, H., Besenbacher, F. & Pedersen, J. S. (2007). Corrigendum to "Nanostructure of the neurocentral growth plate: Insight from scanning small angle X-ray scattering, atomic force microscopy and scanning electron microscopy" [Bone 39 (2006) 530-541] (DOI:10.1016/j.bone.2006.03.013). Bone, 41(1). https://doi.org/10.1016/j.bone.2007.02.010

Fock, V. (2007). Cosh-Gordon equation and quasi-Fuchsian groups. American Mathematical Society. Translations, 49-58.

Kragh, H. (2007). Cosmic radioactivity and the age of the universe, 1900-1930. Journal for the History of Astronomy, 38, 393-412.

Hannestad, S., Mirizzi, A., Raffelt, G. G. & Wong, Y. Y. Y. (2007). Cosmological constraints on neutrino plus axion hot dark matter. Journal of Cosmology and Astroparticle Physics, 0708(015).

Kragh, H. (2007). Cosmology and the entropic creation argument. Historical Studies in the Natural Sciences, 37, 369-382.

Svenning, J.-C. & Skov, F. (2007). Could the tree diversity pattern in Europe be generated by postglacial dispersal limitation. Ecology Letters, 10, 453-460. https://doi.org/10.1111/j.1461-0148.2007.01038

Smirnova, O., Mouritzen, A. S., Patchkovskii, S. & Ivanov, M. Y. (2007). Coulomb-laser coupling in strong-field assisted photo-ionization and molecular tomography. Journal of Physics B: Atomic, Molecular and Optical Physics, 40, F197-F206.

Goodwin, S. M. (2007). Counting conjugacy classes in sylow p-subgroups of Chevalley groups. Journal of Pure and Applied Algebra, 210(1), 201-218.

Pedersen, S. U., Vase, K. H., Holm, A. H., Daasbjerg, K. & Norrman, K. (2007). Covalent Grafting of Glassy Carbon Electrodes with Diaryliodonium Salts: New Aspects. Langmuir, 23(7), 3786-3793. https://doi.org/10.1021/la0629227

Weigelt, S., Busse, C. W., Bombis, C., Knudsen, M. M., Gothelf, K. V., Strunskus, T., Wöll, C., Dahlbom, M., Hammer, B., Lægsgaard, E., Besenbacher, F. & Linderoth, T. R. (2007). Covalent interlinking of an aldehyde and an amine on an Au(111) surface in ultrahigh vacuum. Angewandte Chemie International Edition, 46.

Nørregaard, R., Jensen, BL., Topcu, S., Aamann, M. A. D., Schweer, H., Knepper, M. A., Nielsen, S. & Frøkiær, J. (2007). COX-2 activity transiently contributes to increased water and NaCl excretion in the polyuric phase after release of ureteral obstruction. American Journal of Physiology: Renal Physiology, 292(5), 1322-1333.

Labouriau, R., Østergaard, M., Ernst, A., Thorsgaard, N., Overvad, H., Autrup, H. & Andersen, V. (2007). COX-2 and MDR1 gene variants are associated with both Crohns disease and lucerative colitis in Danish patients. In Proceedings of DDW

Pedersen, H. B., Altevogt, S., Jordon-Thaden, B., Heber, O., Rappaport, M. L., Schwalm, D., Ullrich, J., Zajfman, D., Treusch, R., Guerassimova, N., Martins, M., Hoeft, J.-T., Wellhöfer, M. & Wolf, A. (2007). Crossed Beam Photodissociation Imaging of HeH⁺ with Vacuum Ultraviolet Free-Electron Laser Pulses. Physical Review Letters, 98.

Svenningsen, L., Balling, N., Jacobsen, B. H., Kind, R., Wylegalla, K. & Schweitzer, J. (2007). Crustal root beneath the highlands of southern Norway resolved by teleseismic receiver functions. Geophysical Journal International, 170, 1129-1138.

Baker, J. M., Funch, P. & Giribet, G. (2007). Cryptic speciation in the recently discovered American cycliophoran Symbion americanus; genetic structure and population expansion. Marne Biology, 151, 2183-2193. https://doi.org/10.1007/s00227-007-0654-8

Schaffner, C. (2007). Cryptography in the Bounded-Quantum-Storage Model.

Johnsen, S., Bentien, A., Madsen, G. K. H., Nygren, M. & Iversen, B. B. (2007). Crystal structure and transport properties of nickel containing germanium clathrates. Physical Review B, 76, 245126-1-7.

Törnroth-Horsefield, S., Gourdon, P., Horsefield, R., Brive, L., Yamamoto, N., Mori, H., Snijder, A. & Neutze, R. (2007). Crystal structure of AcrB in complex with a single transmembrane subunit reveals another twist. Structure, 15(12), 1663-73. https://doi.org/10.1016/j.str.2007.09.023

Bøggild, A., Nielsen, J. S., Nielsen, G., Valentin-Hansen, P. & Brodersen, D. E. (2007). Crystal Structure of an Hfq-like protein from Methanococcus jannaschii. Poster session presented at CoLuAa 2007, Århus, Denmark.

Pedersen, B. P., Buch-Pedersen, M. J., Morth, J. P., Palmgren, M. G. & Nissen, P. (2007). Crystal structure of the plasma membrane proton pump. Nature, 450(7172), 1111-1114. https://doi.org/10.1038/nature06417

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