Publications

Follow the latest publications from the Faculty of Natural Sciences.

Nyrup, R. (2023, Oct 13). Opening the black box: Transparency in AI is not enough. https://iai.tv/articles/opening-the-black-box-auid-2630

Hu, E., Grønbæk, J. E., Houck, A. & Heo, S. (2023). OpenMic: Utilizing Proxemic Metaphors for Conversational Floor Transitions in Multiparty Video Meetings. In A. Schmidt, K. Väänänen, T. Goyal, P. O. Kristensson, A. Peters, S. Mueller, J. R. Williamson & M. L. Wilson (Eds.), CHI'23: Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems Article 793 Association for Computing Machinery. https://doi.org/10.1145/3544548.3581013

Brinkløv, S. M. M., Macaulay, J., Bergler, C., Tougaard, J., Beedholm, K., Elmeros, M. & Madsen, P. T. (2023). Open-source workflow approaches to passive acoustic monitoring of bats. Methods in Ecology and Evolution, 14(7), 1747-1763. https://doi.org/10.1111/2041-210X.14131

Merl, T., Hu, Y., Pedersen, J., Zieger, S. E., Bornø, M. L., Tariq, A., Sommer, S. G. & Koren, K. (2023). Optical chemical sensors for soil analysis: possibilities and challenges of visualising NH3 concentrations as well as pH and O2 microscale heterogeneity. Environmental Science: Advances, 2(9), 1210-1219. https://doi.org/10.1039/d3va00127j

Kalinichev, A. V., Zieger, S. E. & Koren, K. (2023). Optical sensors (optodes) for multiparameter chemical imaging: classification, challenges, and prospects. Analyst, 149(1), 29-45. https://doi.org/10.1039/d3an01661g

Li, X. (2023). Optimal control of quantum state preparation and entanglement creation in two-qubit quantum system with bounded amplitude. Scientific Reports, 13(1), Article 14734. https://doi.org/10.1038/s41598-023-41688-z

Darooei, R., Nazari, M., Kafieh, R. & Rabbani, H. (2023). Optimal Deep Learning Architecture for Automated Segmentation of Cysts in OCT Images Using X-Let Transforms. Diagnostics, 13(12), Article 1994. https://doi.org/10.3390/diagnostics13121994

Srinivasan, S. & Tripathi, U. (2023). Optimal Explicit Small-Depth Formulas for the Coin Problem. In B. Saha & R. A. Servedio (Eds.), STOC 2023 - Proceedings of the 55th Annual ACM Symposium on Theory of Computing (pp. 881-894). Association for Computing Machinery. https://doi.org/10.1145/3564246.3585238

Shaik, I. & van de Pol, J. (2023). Optimal Layout Synthesis for Quantum Circuits as Classical Planning. In 2023 IEEE/ACM International Conference on Computer Aided Design (ICCAD) IEEE. https://doi.org/10.1109/ICCAD57390.2023.10323924

Tunç, H. C., Abdulla, P. A., Chakraborty, S., Krishna, S., Mathur, U. & Pavlogiannis, A. (2023). Optimal Reads-From Consistency Checking for C11-Style Memory Models. Proceedings of the ACM on Programming Languages , 7(PLDI), 761–785. Article 137. https://doi.org/10.1145/3591251

Mai, T., Munteanu, A., Musco, C., Rao, A. B., Schwiegelshohn, C. & Woodruff, D. P. (2023). Optimal Sketching Bounds for Sparse Linear Regression. In Proceedings of The 26th International Conference on Artificial Intelligence and Statistics (pp. 11288-11316). PMLR. https://proceedings.mlr.press/v206/mai23a.html

Noor, B. (2023). Optimization and Application of Convolution Neural Networks to Genomics. [PhD dissertation, Aarhus University]. Aarhus Universitet.

Amin, H., Marshall, I. P. G., Bertelsen, R. J., Wouters, I. M., Schlünssen, V., Sigsgaard, T. & Šantl-Temkiv, T. (2023). Optimization of bacterial DNA and endotoxin extraction from settled airborne dust. Science of the Total Environment, 857(Part 2), Article 159455. https://doi.org/10.1016/j.scitotenv.2022.159455

Ponou, S., Lidin, S. & Mudring, A. V. (2023). Optimization of Chemical Bonding through Defect Formation and Ordering-The Case of Mg₇Pt₄Ge₄. Inorganic Chemistry, 62(22), 8519-8529. https://doi.org/10.1021/acs.inorgchem.2c04312

Pedersen, J., Hafner, S. D., Karlsson, V., Pacholski, A. S., Labouriau, R. & Kamp, J. N. (2023). Optimized design of flux chambers for online measurements of NH3 emission after field application of slurry with full-scale farm machinery. Abstract from EGU General Assembly 2023, Vienna, Austria. https://doi.org/10.5194/egusphere-egu23-12677

Caragiannis, I. & Rathi, N. (2023). Optimizing over Serial Dictatorships. In A. Deligkas & A. Filos-Ratsikas (Eds.), Algorithmic Game Theory: 16th International Symposium, SAGT 2023, Egham, UK, September 4–7, 2023, Proceedings (pp. 329-346). Springer. https://doi.org/10.1007/978-3-031-43254-5_19

Majland, M., Jensen, R. B., Højlund, M. G., Zinner, N. T. & Christiansen, O. (2023). Optimizing the number of measurements for vibrational structure on quantum computers: coordinates and measurement schemes. Chemical Science, 14(28), 7733-7742. https://doi.org/10.1039/d3sc01984e

Nielsen, C. L., Martinez Turtos, R., Julsgaard, B., Muren, L. & Balling, P. (2023). Optimizing the transparency of nano-LiF:Cu/silicone nanocomposites for 3D optically stimulated luminescence dosimetry. Journal of Physics: Conference Series, 2630(1), Article 012023. https://doi.org/10.1088/1742-6596/2630/1/012023

Honeyman, A. S., Merl, T., Spear, J. R. & Koren, K. (2023). Optode-based chemical imaging of laboratory burned soil reveals millimeter-scale heterogeneous biogeochemical responses. Environmental Research, 224, Article 115469. https://doi.org/10.1016/j.envres.2023.115469

Nielsen, R. V., Salimi, M., Naserbakht, S., Næsby, A., Andersen, J. E. V., Pedersen, H. B. & Dantan, A. R. (2023). Optomechanical squeeze film sensors for absolute saturation vapor pressure measurements. In 2023 Photonics Global Conference (PGC) (pp. 81-84). IEEE. https://doi.org/10.1109/PGC60057.2023.10344240

Zheng, X. W., Schovsbo, N. H., Bian, L. B., Rudra, A. & Sanei, H. (2023). Organic geochemical and petrographic characteristics of the Cambrian-Ordovician organic-rich marine shales in Scandinavia. Petroleum Science, 20(5), 2637-2647. https://doi.org/10.1016/j.petsci.2023.04.011

Sobek, A., Abel, S., Sanei, H., Bonaglia, S., Li, Z., Horlitz, G., Rudra, A., Oguri, K. & Glud, R. N. (2023). Organic matter degradation causes enrichment of organic pollutants in hadal sediments. Nature Communications, 14(1), Article 2012. https://doi.org/10.1038/s41467-023-37718-z

Corti, V., Barløse, C. L., Østergaard, N. L., Kristensen, A., Jessen, N. I. & Jørgensen, K. A. (2023). Organocatalytic Enantioselective Thermal [4 + 4] Cycloadditions. Journal of the American Chemical Society, 145(2), 1448-1459. https://doi.org/10.1021/jacs.2c12750

Carpenter, A. P., Khuu, P., Weidner, T., Johnson, C. P., Roeters, S. J. & Baio, J. E. (2023). Orientation of the Dysferlin C2A Domain is Responsive to the Composition of Lipid Membranes. Journal of Physical Chemistry B, 127(2), 577-589. https://doi.org/10.1021/acs.jpcb.2c06716

Cerrillo-Escoriza, J., Lobo, F. J., Puga-Bernabéu, A., López Quirós, A. & Mendes, I. (2023). Origin and driving mechanisms of marine litter in the shelf-incised Motril, Carchuna and Calahonda canyons (northern Alboran Sea). Frontiers in Marine Science, 10, Article 1098927. https://doi.org/10.3389/fmars.2023.1098927

Rudmin, M., López-Quirós, A., Banerjee, S., Ruban, A., Shaldybin, M., Bernatonis, P., Singh, P., Dauletova, A. & Maximov, P. (2023). Origin of Fe-rich clay minerals in Early Devonian volcanic rocks of the Northern Minusa basin, Eastern Siberia. Applied Clay Science, 241, Article 107014. https://doi.org/10.1016/j.clay.2023.107014

Hermanowski, P. & Piotrowski, J. A. (2023). Origin of glacial curvilineations by subglacial meltwater erosion: Evidence from the Stargard drumlin field, Poland. Earth Surface Processes and Landforms, 48(2), 282-294. https://doi.org/10.1002/esp.5485

Adamsen, K. C., Petrik, N. G., Dononelli, W., Kimmel, G. A., Xu, T., Li, Z., Lammich, L., Hammer, B., Lauritsen, J. V. & Wendt, S. (2023). Origin of hydroxyl pair formation on reduced anatase TiO₂(101). Physical Chemistry Chemical Physics, 25(19), 13645-13653 . https://doi.org/10.1039/d3cp01051a

Tong, T., Ozsvar, A., Hou, W.-H., Capogna, M. & Korshøj, A. R. (2023). OS10.6.A GLIOBLASTOMA CELLS IMITATE NEURON’S EXCITABILITY IN ACUTE AND ORGANOTYPIC HUMAN BRAIN SLICES. Neuro-Oncology, 25(Supplement 2), ii22-ii23. https://doi.org/10.1093/neuonc/noad137.066

Swann, A. F. (2023). Otiman, Alexandra. Special Hermitian metrics on Oeljeklaus-Toma manifolds. Bull. Lond. Math. Soc. 54 (2022), no.2, 655–667. MathSciNet, Article MR4453697. https://mathscinet.ams.org/mathscinet/article?mr=4453697

Caragiannis, I. & Schwartzbach, N. I. (2023). Outsourcing Adjudication to Strategic Jurors. In E. Elkind (Ed.), Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence (pp. 2546-2553). International Joint Conferences on Artificial Intelligence. https://doi.org/10.24963/ijcai.2023/283

Nielsen, K. H. (2023). Overdrevet ormehul. Weekendavisen, Sektion 4 (Ideer)(4), 5-5. Article e95e899d.

Singh, Y., Trautwein, C., Romani, J., Salker, M. S., Neckel, P. H., Fraccaroli, I., Abeditashi, M., Woerner, N., Admard, J., Dhariwal, A., Dueholm, M. K. D., Schäfer, K. H., Lang, F., Otzen, D. E., Lashuel, H. A., Riess, O. & Casadei, N. (2023). Overexpression of human alpha-Synuclein leads to dysregulated microbiome/metabolites with ageing in a rat model of Parkinson disease. Molecular Neurodegeneration, 18(1), Article 44. https://doi.org/10.1186/s13024-023-00628-1

Zahra, K. M., Byrne, C., Li, Z., Hazeldine, K. & Walton, A. S. (2023). Oxide-mediated nitrogen doping of CVD graphene and their subsequent thermal stability. Nanotechnology, 34(45), Article 455703. https://doi.org/10.1088/1361-6528/acedb5

Nisavic, M., Wørmer, G. J., Nielsen, C. S., Jeppesen, S. M., Palmfeldt, J. & Poulsen, T. B. (2023). oxSTEF Reagents Are Tunable and Versatile Electrophiles for Selective Disulfide-Rebridging of Native Proteins. Bioconjugate Chemistry, 34(6), 994-1003. https://doi.org/10.1021/acs.bioconjchem.3c00005

Merte, L. R., Braud, N., Buß, L., Bisbo, M. K., Wallander, H. J., Krisponeit, J. O., Flege, J. I., Hammer, B., Falta, J. & Lundgren, E. (2023). Oxygen Storage by Tin Oxide Monolayers on Pt₃Sn(111). Journal of Physical Chemistry C, 127(6), 2988-2994. https://doi.org/10.1021/acs.jpcc.2c09041

Støckler, L. J., Christensen, R. S., Kløve, M., Bertelsen, A. D., Borup, A. B., Krause, L., Takahashi, S., Fujita, T., Kasai, H., Inoue, I., Nishibori, E. & Iversen, B. B. (2023). Pair Distribution Function from Liquid Jet Nanoparticle Suspension using Femtosecond X-ray Pulses. ChemPhysChem, 24(23), Article e202300407. https://doi.org/10.1002/cphc.202300407

Pfeuffer, K., Obernolte, J., Dietz, F., Mäkelä, V., Sidenmark, L., Manakhov, P., Pakanen, M. & Alt, F. (2023). PalmGazer: Unimanual Eye-hand Menus in Augmented Reality. In T. Huang, M. Sra & F. Argelaguet (Eds.), SUI '23: Proceedings of the 2023 ACM Symposium on Spatial User Interaction (pp. 1–12). Article 11 Association for Computing Machinery. https://doi.org/10.1145/3607822.3614523

Sørensen, S. G., Shrikhande, A., Poulsgaard, G. A., Christensen, M. H., Bertl, J., Laursen, B. E., Hoffmann, E. R. & Pedersen, J. S. (2023). Pan-cancer association of DNA repair deficiencies with whole-genome mutational patterns. eLife, 12, Article e81224. https://doi.org/10.7554/elife.81224

Vilstrup, A. P. (2023). Paralog-based genome regulation in the male germline of Drosophila melanogaster. [PhD dissertation, Aarhus University]. Aarhus Universitet.

Bianchi, M., Acharya, S., Dirnberger, F., Klein, J., Pashov, D., Mosina, K., Sofer, Z., Rudenko, A. N., Katsnelson, M. I., Van Schilfgaarde, M., Rösner, M. & Hofmann, P. (2023). Paramagnetic electronic structure of CrSBr: Comparison between ab initio GW theory and angle-resolved photoemission spectroscopy. Physical Review B, 107(23), Article 235107. https://doi.org/10.1103/PhysRevB.107.235107

Tziperman, O., Christiansen, V. R., Kaminer, I. & Mølmer, K. (2023). Parametric Amplification of a Quantum Pulse. https://arxiv.org/abs/2312.04394

Johns, C. A., Evangelista Belo, J. M., Pfeuffer, K. & Klokmose, C. N. (2023). Pareto Optimal Layouts for Adaptive Mixed Reality. In CHI 2023 - Extended Abstracts of the 2023 CHI Conference on Human Factors in Computing Systems Article 223 Association for Computing Machinery. https://doi.org/10.1145/3544549.3585732

Grønbæk, J. E., Pfeuffer, K., Velloso, E., Astrup, M., Pedersen, M. I., Kjær, M., Leiva, G. & Gellersen, H. (2023). Partially Blended Realities: Aligning Dissimilar Spaces for Distributed Mixed Reality Meetings. In A. Schmidt, K. Väänänen, T. Goyal, P. O. Kristensson, A. Peters, S. Mueller, J. R. Williamson & M. L. Wilson (Eds.), CHI '23: Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems Article 456 Association for Computing Machinery. https://doi.org/10.1145/3544548.3581515

Brenes, M., Guarnieri, G., Purkayastha, A., Eisert, J., Segal, D. & Landi, G. (2023). Particle current statistics in driven mesoscale conductors. Physical Review B, 108(8), Article L081119. https://doi.org/10.1103/PhysRevB.108.L081119

Abele, H., Alekou, A., Algora, A., Andersen, K., Baeßler, S., Barron-Pálos, L., Barrow, J., Baussan, E., Bentley, P., Berezhiani, Z., Beßler, Y., Bhattacharyya, A. K., Bianchi, A., Bijnens, J., Blanco, C., Kraljevic, N. B., Blennow, M., Bodek, K., Bogomilov, M. ... Zou, Y. (2023). Particle physics at the European Spallation Source. Physics Reports, 1023, 1-84. https://doi.org/10.1016/j.physrep.2023.06.001

Lupien, R. L. (2023). Past climate unravels the eastern African paradox. Nature, 620(7973), 279-280. https://doi.org/10.1038/d41586-023-02297-y

Esposito, C., Audet, J., Levi, E. E., Zhang, W., Marshall, I. P. G. & Davidson, T. A. (2023). Patterns and processes of methane production and oxidation in shallow lakes under different nutrient and warming treatments. Abstract from ASLO Aquatic Sciences Meeting 2023, Palma, Spain.