Publications

Follow the latest publications from the Faculty of Natural Sciences.

Zymaroieva, A., Kolomiychuk, V., Fedoniuk, T., Goncharenko, I., Borsuk, O., Melnychuk, T. & Svenning, J. C. (2024). Post-fire recovery of vegetation in the Chornobyl Radiation and Ecological Biosphere Reserve. International Journal of Environmental Studies, 81(1), 489-509. https://doi.org/10.1080/00207233.2023.2287345

Daviray, M., Geslin, E., Risgaard-Petersen, N., Scholz, V. V., Fouet, M. & Metzger, E. (2024). Potential impacts of cable bacteria activity on hard-shelled benthic foraminifera: implications for their interpretation as bioindicators or paleoproxies. Biogeosciences, 21(4), 911-928. https://doi.org/10.5194/bg-21-911-2024

Ghouse, J., Ahlberg, G., Rand, S. A., Olesen, M. S., Vilhjalmsson, B., Stender, S. & Bundgaard, H. (2024). Potential Influence of Risk Factor Control on the Association Between Lipoprotein(a) and Atherosclerotic Cardiovascular Disease. Arteriosclerosis, Thrombosis, and Vascular Biology, 44(6), 1455-1457. https://doi.org/10.1161/ATVBAHA.124.320990

Pastor-López, E. J., Escolà, M., Kisielius, V., Arias, C. A., Carvalho, P. N., Gorito, A. M., Ramos, S., Freitas, V., Guimarães, L., Almeida, C. M. R., Müller, J. A., Küster, E., Kilian, R. M., Diawara, A., Ba, S. & Matamoros, V. (2024). Potential of nature-based solutions to reduce antibiotics, antimicrobial resistance, and pathogens in aquatic ecosystems. a critical review. Science of the Total Environment, 946, Article 174273. https://doi.org/10.1016/j.scitotenv.2024.174273

Essl, F., García-Rodríguez, A., Lenzner, B., Alexander, J. M., Capinha, C., Gaüzère, P., Guisan, A., Kühn, I., Lenoir, J., Richardson, D. M., Rumpf, S. B., Svenning, J. C., Thuiller, W., Zurell, D. & Dullinger, S. (2024). Potential sources of time lags in calibrating species distribution models. Journal of Biogeography, 51(1), 89-102. https://doi.org/10.1111/jbi.14726

Filos-Ratsikas, A., Hansen, K. A., Høgh, K. & Hollender, A. (2024). PPAD-Membership for Problems with Exact Rational Solutions: A General Approach via Convex Optimization. In B. Mohar, I. Shinkar & R. O'Donnell (Eds.), STOC 2024 - Proceedings of the 56th Annual ACM Symposium on Theory of Computing (pp. 1204-1215). Association for Computing Machinery, Inc.. https://doi.org/10.1145/3618260.3649645

Wong, E., Esquivel, J. S., Leiva, G., Grønbæk, J. E. & Velloso, E. (2024). Practice-informed Paterns for Organising Large Groups in Distributed Mixed Reality Collaboration. In CHI 2024 - Proceedings of the 2024 CHI Conference on Human Factors in Computing Sytems Article 1030 Association for Computing Machinery, Inc.. https://doi.org/10.1145/3613904.3642502

Bang Jensen, B., Thorup, V. M., Foldager, L., Nielsen, K. V., Frandsen, M., Pastell, M. & Krogh, M. A. (2024). Precision fish farming in recirculated aquaculture systems - from theory to implementation. Poster session presented at 17th International Symposium on Veterinary Epidemiology and Economics, Sydney, New South Wales, Australia. https://isvee2024-c10000.eorganiser.com.au/data/clients/1/791/submissions/177854/abstract.pdf

Goupil, M. J., Catala, C., Samadi, R., Belkacem, K., Ouazzani, R. M., Reese, D. R., Appourchaux, T., Mathur, S., Cabrera, J., Börner, A., Paproth, C., Moedas, N., Verma, K., Lebreton, Y., Deal, M., Ballot, J., Chaplin, W. J., Christensen-Dalsgaard, J., Cunha, M. ... Hatt, E. (2024). Predicted asteroseismic detection yield for solar-like oscillating stars with PLATO. Astronomy and Astrophysics, 683, Article A78. https://doi.org/10.1051/0004-6361/202348111

Greussing, E., Guenther, L., Baram-Tsabari, A., Dabran-Zivan, S., Jonas, E., Klein-Avraham, I., Taddicken, M., Beets, B., Brossard, D., Chakraborty, A., Agergaard, T. E., Fage-Butler, A., Ju Huang, C., Nielsen, K. H., Kankaria, S., Lo, Y.-Y., Riedlinger, M. & Song, H. J. (2024). Predicting and describing the use of generative AI in science-related information search: Insights from a multinational survey. Abstract from Annual Conference of the “Science Communication” Division of the German Communication Association 2024, Zürich, Switzerland. https://www.ikmz.uzh.ch/dam/jcr:f29f21aa-1025-4b39-b848-4aefbd13a781/AI&SCICOMM24_Book%20of%20Abstracts.pdf

Luige, J., Armaos, A., Tartaglia, G. G. & Ørom, U. A. V. (2024). Predicting nuclear G-quadruplex RNA-binding proteins with roles in transcription and phase separation. Nature Communications, 15, Article 2585. https://doi.org/10.1038/s41467-024-46731-9

Jensen, M. S., Madsen, R. B., Salionov, D. & Glasius, M. (2024). Predicting the chemical composition of biocrude from hydrothermal liquefaction of biomasses using a multivariate statistical approach. Sustainable Energy and Fuels, 8(17), 3877-3891. https://doi.org/10.1039/d4se00860j

Foldager, L., Thorup, V. M., Pastell, M., Jensen, B. B. & Krogh, M. A. (2024). Prediction of mortality in land-based recirculating aquaculture system (RAS) trout farms. In P. Linde (Ed.), Symposium i Anvendt Statistik 2024 (pp. 17-24). Økonomisk Institut, Københavns Universitet & Symposium i Anvendt Statistik. http://www.statistiksymposium.dk/Symposium 2024 WEB.pdf

Thorup, V. M., Foldager, L., Pastell, M., Frandsen, M., Jensen, B. B. & Krogh, M. A. (2024). Prediction of mortality in recirculation aquaculture systems. Poster session presented at AQUA Conference 2025, Copenhagen, Denmark.

Schindler, S. (2024). Predictivism and avoidance of ad hoc-ness: an empirical study. Studies in History and Philosophy of Science Part A, 104, 68–77. https://doi.org/10.1016/j.shpsa.2023.11.008

Nimptsch, K., Aydin, E. E., Chavarria, R. F. R., Janke, J., Poy, M. N., Oxvig, C., Steinbrecher, A. & Pischon, T. (2024). Pregnancy associated plasma protein-A2 (PAPP-A2) and stanniocalcin-2 (STC2) but not PAPP-A are associated with circulating total IGF-1 in a human adult population. Scientific Reports, 14(1), Article 1770. https://doi.org/10.1038/s41598-024-52074-8, https://doi.org/10.1038/s41598-024-52074-8

Kristiansen, S. M., Delle Grazie, F. M. & Kähler Holst, M. (2024). Prehistoric use of three buildings: evidence from multi-element mapping of subsoil. In A. Pedersen, M. D. Jessen & M. K. Holst (Eds.), Jelling : Monuments and Landscape (pp. 215-224). Syddansk Universitetsforlag.

Ottosen, R. N., Seefeldt, J. M., Hansen, J., Nielsen, R., Møller, N., Johannsen, M. & Poulsen, T. B. (2024). Preparation and Preclinical Characterization of a Simple Ester for Dual Exogenous Supply of Lactate and Beta-hydroxybutyrate. Journal of Agricultural and Food Chemistry, 72(36), 19883-19890. https://doi.org/10.1021/acs.jafc.4c04849

Morigi, D. (2024). Presentations of Braid Groups of Type A Arising from (m+2)-angulations of Regular Polygons. Algebras and Representation Theory, 27(2), 1237-1265. https://doi.org/10.1007/s10468-024-10257-x

Lundgren, E. J., Wallach, A. D., Svenning, J. C., Schlaepfer, M. A., Andersson, A. L. A. & Ramp, D. (2024). Preventing extinction in an age of species migration and planetary change. Conservation Biology, 38(6), Article e14270. https://doi.org/10.1111/cobi.14270

Toft, S., Albuquerque, C., Degn, N., Kjærby, H. & Kyneb, S. (2024). Prey killing rate of a generalist predator may be enhanced by macronutrient manipulation. BioControl, 69(2), 145-155. https://doi.org/10.1007/s10526-024-10251-8

Wooster, E. I. F., Ramp, D., Lundgren, E. J., Bonsen, G. T., Geisler-Edge, A., Ben-Ami, D., Carthey, A. J. R., Carroll, S., Keynan, O., Olek, Y., O'Neill, A., Shanas, U. & Wallach, A. D. (2024). Prey responses to foxes are not determined by nativeness. Ecography, 2024(4), Article e07031. https://doi.org/10.1111/ecog.07031

Zaru, N., Silvestri, S., Assiri, M., Bai, P., Hansen, T. M. & Vignoli, G. (2024). Probabilistic Petrophysical Reconstruction of Danta's Alpine Peatland via Electromagnetic Induction Data. Earth and Space Science, 11(3), Article e2023EA003457. https://doi.org/10.1029/2023EA003457

Madzharova, F., Chatterley, A. S., Roeters, S. J. & Weidner, T. (2024). Probing Backbone Coupling within Hydrated Proteins with Two-Color 2D Infrared Spectroscopy. The Journal of Physical Chemistry Letters, 15(18), 4933-4939. https://doi.org/10.1021/acs.jpclett.4c00401

Bednarz, A., Rosendal, R. T., Lund, L. M. & Birkedal, V. (2024). Probing G-quadruplex-ligand binding using DNA intrinsic fluorescence. Biochimie, 227(Part A), 61-67. https://doi.org/10.1016/j.biochi.2024.06.009

Terry, L. M., Foreman, M. M., Rasmussen, A. P., McCoy, A. B. & Weber, J. M. (2024). Probing Ion−Receptor Interactions in Halide Complexes of Octamethyl Calix[4]Pyrrole. Journal of the American Chemical Society, 146(18), 12401-12409. https://doi.org/10.1021/JACS.3C13445

Diessel, O. K., Von Milczewski, J., Christianen, A. & Schmidt, R. (2024). Probing molecular spectral functions and unconventional pairing using Raman spectroscopy. Physical Review Research , 6(2), Article 023239. https://doi.org/10.1103/PhysRevResearch.6.023239

Sneftrup, P. S., Juergens, P., De Michele, V., Andrade, J. R. C., Vrakking, M. J. J., Balling, P. & Mermillod-Blondin, A. (2024). Probing nonlinear excitation conditions: photoluminescence and nonlinear absorption studies in laser-irradiated dielectrics. Applied Physics A: Materials Science & Processing, 130(3), Article 175. https://doi.org/10.1007/s00339-024-07311-2

Skaanvik, S. A. & Gateman, S. M. (2024). Probing passivity of corroding metals using scanning electrochemical probe microscopy. Electrochemical Science Advances, 4(5), Article e2300014. https://doi.org/10.1002/elsa.202300014

Nielsen, K. H. (2024). Problemet med Central Park. Weekendavisen, Sektion 4 (Ideer), 5.

Naveed, K., Madsen, L. M., Grombacher, D. & Larsen, J. J. (2024). Processing Time-domain Induced Polarization Data Using Variational Mode Decomposition. IEEE Transactions on Geoscience and Remote Sensing, 62, 1-13. Article 5905713. https://doi.org/10.1109/TGRS.2024.3362290

Nielsen, K. H. (2024). Professorens prutter. Weekendavisen, Sektion 4 (Ideer), 5.

Malle, M. G., Song, P., Löffler, P. M. G., Kalisi, N., Yan, Y., Valero, J., Vogel, S. & Kjems, J. (2024). Programmable RNA Loading of Extracellular Vesicles with Toehold-Release Purification. Journal of the American Chemical Society, 146(18), 12410-12422. https://doi.org/10.1021/JACS.3C13123

Stassen, P. J. A. (2024). Programming language semantics in modal type theories. Department of Computer Science, University of Aarhus.

Last, K. B., Malte, H., Rindom, E., Guagnoni, I. N. & Wang, T. (2024). Proportional increment of oxygen consumption, heart rate and core body temperature in the digesting Python bivittatus. Journal of Experimental Biology, 227(19), Article jeb248021. https://doi.org/10.1242/jeb.248021

Holm, E. B., Nygaard, A., Dakin, J., Hannestad, S. & Tram, T. (2024). PROSPECT: A profile likelihood code for frequentist cosmological parameter inference. Monthly Notices of the Royal Astronomical Society, 535(4), 3686-3699. https://doi.org/10.1093/mnras/stae2555

Rasulov, U., Wang, H. K., Viennet, T., Droemer, M. A., Matosin, S., Schindler, S., Sun, Z. Y. J., Mureddu, L., Vuister, G. W., Robson, S. A., Arthanari, H. & Kuprov, I. (2024). Protein NMR assignment by isotope pattern recognition. Science Advances, 10(36), Article eado0403. https://doi.org/10.1126/sciadv.ado0403

Jensen, K. T., Nielsen, N. S., Viana Almeida, A., Thøgersen, I. B., Enghild, J. J. & Harwood, S. L. (2024). Proteolytic cleavage of the TGFβ co-receptor CD109 changes its conformation, resulting in protease inhibition via activation of its thiol ester, and dissociation from the cell membrane. FEBS journal, 291(14), 3169-3190. https://doi.org/10.1111/febs.17128

Lykke-Andersen, S., Rouvière, J. O., Schmid, M., Gockert, M. & Jensen, T. H. (2024). Protocol for generating customizable and reproducible plots of sequencing coverage data using the seqNdisplayR package. STAR Protocols, 5(2), Article 102960. https://doi.org/10.1016/j.xpro.2024.102960

Wittig, N. K., Pedersen, C., Palle, J., Østergaard, M., Christensen, T. E. K., Kahnt, M., Sadetskaia, A., Thomsen, J. S., Brüel, A. & Birkedal, H. (2024). Protocols for preparation of biomineralized samples for computed tomography. Tomography of Materials and Structures, 5, Article 100027. https://doi.org/10.1016/j.tmater.2024.100027

Camenisch, G.-M., Wili, N., Jeschke, G. & Ernst, M. (2024). Pulsed dynamic nuclear polarization: a comprehensive Floquet description. Physical Chemistry Chemical Physics, 26(25), 17666-17683. https://doi.org/10.1039/d4cp01788a

Ober, V. T., Githure, G. B., Santos, Y. V., Becker, S., Munoz, G. M., Basquin, J., Schwede, F., Lorentzen, E. & Boshart, M. (2024). Purine nucleosides replace cAMP in allosteric regulation of PKA in trypanosomatid pathogens. eLife, 12, Article RP91040. https://doi.org/10.7554/eLife.91040

Petersen, H. I., Deskur, H., Rudra, A., Ørberg, S. B., Krause-Jensen, D. & Sanei, H. (2024). Pyrolysis of macroalgae: Insight into product yields and biochar morphology and stability. International Journal of Coal Geology, 286, Article 104498. https://doi.org/10.1016/j.coal.2024.104498

Holland, B., Alsen, P., Nytoft, H. P., Rudra, A., Sanei, H. & Petersen, H. I. (2024). Quality and composition of Lower Cretaceous carbonate source rocks and seepage oils in the Belize Basin, southern Belize, Central America. International Journal of Coal Geology, 285, Article 104478. https://doi.org/10.1016/j.coal.2024.104478

Vara-Vela, A. L., Rojas Benavente, N., Nielsen, O. K., Nascimento, J. P., Alves, R., Gavidia-Calderon, M. & Karoff, C. (2024). Quantifying Methane Emissions Using Satellite Data: Application of the Integrated Methane Inversion (IMI) Model to Assess Danish Emissions. Remote Sensing, 16(23), Article 4554. https://doi.org/10.3390/rs16234554

McPherson, L., Badger, J., Fertitta, K., Gordanier, M., Nemeth, C. & Bejder, L. (2024). Quantifying the abundance and survival rates of island-associated spinner dolphins using a multi-state open robust design model. Scientific Reports, 14(1), 14764. Article 14764. https://doi.org/10.1038/s41598-024-64220-3

Rivera-Dean, J., Stammer, P., Maxwell, A. S., Lamprou, T., Pisanty, E., Tzallas, P., Lewenstein, M. & Ciappina, M. F. (2024). Quantum-optical analysis of high-order harmonic generation in H2+ molecules. Physical Review A, 109(3), Article 033706. https://doi.org/10.1103/PhysRevA.109.033706

Lund, M. M. (2024). Quantum State Manipulation in Temporal Modes of Light. Aarhus University.

Høyer, N. M. & Christiansen, O. (2024). Quasi-direct Quantum Molecular Dynamics: The Time-Dependent Adaptive Density-Guided Approach for Potential Energy Surface Construction. Journal of Chemical Theory and Computation, 20(2), 558-579. https://doi.org/10.1021/acs.jctc.3c00962

Caragiannis, I. & Kalantzis, G. (2024). Randomized learning-augmented auctions with revenue guarantees. In K. Larson (Ed.), Proceedings of the 33rd International Joint Conference on Artificial Intelligence (IJCAI) (pp. 2687-2694). International Joint Conferences on Artificial Intelligence.

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