Publications from Natural Sciences

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de Vernal, A., Gersonde, R., Goosse, H., Seidenkrantz, M-S. & Wolff, E. W. (2013). Sea ice in the paleoclimate system: the challenge of reconstructing sea ice from proxies - an introduction. Quaternary Science Reviews, 79, 1-8. https://doi.org/10.1016/j.quascirev.2013.08.009

de Vernal, A., Eynaud, F., Henry, M., Limoges, A., Londeix, L., Matthiessen, J., Marret, F., Pospelova, V., Radi, T., Rochon, A., Van Nieuwenhove, N. & Zaragosi, S. (2018). Distribution and (palaeo)ecological affinities of the main spiniferites taxa in the mid-high latitudes of the Northern Hemisphere. Palynology, 42(S1), 182-202. https://doi.org/10.1080/01916122.2018.1465730

de Ugarte Postigo, A., Thoene, C. C., Fynbo, J. P. U., Hjorth, J., Jakobsson, P., Banhidi, Z., Grundahl, F. & Arentoft, T. (2008, Aug 11). GRB 080810: Observations from NOT: GCN Circular 8089.

de Toda, I. M., Rattan, S., De la Feunte, M. & Arranz, L. (2021). Female mice reaching exceptionally high old age have preserved 20S proteasome activities. Antioxidants, 10(9), [1397]. https://doi.org/10.3390/antiox10091397

de Souza-Pinto, N. C., Eide, L., Hogue, B. A., Thybo, T., Stevnsner, T., Klungland, A., Seeberg, E. & Bohr, V. (2001). Repair of 8-oxodeoxyguanosine lesions in mitochrondrial DNA depends on oxoguanine DNA glycosylase (OGG1) gene and 8-oxoguanine accumulates in the mitochondrial DNA of OGG1-defective mice. Cancer Research, 61, 5378-5381.

de Souza-Pinto, N. C., Wilson III, D. M., Stevnsner, T. V. & Bohr, V. (2008). Mitochondrial DNA, base excision repair and neurodegeneration. D N A Repair, 7, 1098-1109.

de Souza-Pinto, N., A. Mason, P., Hashiguchi, K., Weismann, L., Tian, J., Guay, D., Lebel, M., Stevnsner, T. V., Rasmussen, L. J. & Bohr, V. (2009). Novel DNA mismatch-repair activity involving YB-1 in human mitochondria. D N A Repair, 8(6), 704-719.

de Senneville, B. D., Noe, K. Ø., Ries, M., Pedersen, M., Moonen, C. & Sørensen, T. S. (2008). An optimised multi-baseline approach for on-line MR-temperature monitoring on commodity graphics hardware. In Fifth IEEE International Symposium on Biomedical Imaging (ISBI): From Nano to Macro (Vol. Non-Optical micro-imaging, pp. 1513-1516). IEEE. https://doi.org/10.1109/ISBI.2008.4540909

de Paz, L., Resin, A., Howard, K., Sutherland, D. S. & Wejse, P. (2011). Antimicrobial effect of chitosan nanoparticles on streptococcus mutans biofilms. Applied and Environmental Microbiology, 77(11), 3892-3895.

de Montellano, A. G. S. O., Hekker, S. & Themessl, N. (2018). Automated asteroseismic peak detections. Royal Astronomical Society. Monthly Notices, 476(2), 1470-1496. https://doi.org/10.1093/mnras/sty253

de Montaudouin, X., Jensen, K. T., Desclaux, C., Wegeberg, A. M. & Sajus, M. C. (2005). Effect of intermediate host size (Cerastoderma edule) on infectivity of cercariae of Himasthla quissetensis (Echinostomatidae: Trematoda). J. Mar. Biol. Ass. U.K., 85, 809-812.

de Melo Costa, V. R., Pfeuffer, J., Louloupi, A., Ørom, U. A. V. & Piro, R. M. (2021). SPLICE-q: a Python tool for genome-wide quantification of splicing efficiency. BMC Bioinformatics, 22(1), [368]. https://doi.org/10.1186/s12859-021-04282-6

de Kruif, C. G. K., Pedersen, J. S., Huppertz, T. & Anema, S. G. (2013). Coacervates of Lactotransferrin and β- or κ-Casein: Structure Determined Using SAXS. Langmuir, 29(33), 10483-10490. https://doi.org/10.1021/la402236f

de Koning, D-J., Jaffrézic, F., Lund, M. S., Watson, M., Channing, C., Hulsegge, I., Pool, M., Buitenhuis, B., Hedegaard, J., Hornshøj, H., Jiang, L., Sørensen, P., Marot, G., Delmas, C., Lê Cao, K-A., SanChristobal, M., Baron, M. D., Malinverni, R., Stella, A. ... Janss, L. (2007). The EADGENE Microarray Data Analysis Workshop. Genetics Selection Evolution, (39), 621-631. https://doi.org/10.1051/gse:2007028

de Jaeger, T., Gonzalez-Gaitan, S., Anderson, J. P., Galbany, L., Hamuy, M., Phillips, M. M., Stritzinger, M. D., Gutierrez, C. P., Bolt, L., Burns, C. R., Campillay, A., Castellon, S., Contreras, C., Folatelli, G., Freedman, W. L., Hsiao, Y. C. E., Krisciunas, K., Krzeminski, W., Kuncarayakti, H. ... Suntzeff, N. (2015). A HUBBLE DIAGRAM FROM TYPE II SUPERNOVAE BASED SOLELY ON PHOTOMETRY: THE PHOTOMETRIC COLOR METHOD. The Astrophysical Journal, 815(2), [121]. https://doi.org/10.1088/0004-637X/815/2/121

de Jaeger, T., Anderson, J. P., Pignata, G., Hamuy, M., Kankare, E., Stritzinger, M. D., Benetti, S., Bufano, F., Elias-Rosa, N., Folatelli, G., Förster, F., Gonzaez-Gaitan, S., Gutierrez, C. P., Inserra, C., Kotak, R., Lira, P., Morrell, N., Taddia, F. & Tomasella, L. (2015). SN 2011A: A LOW-LUMINOSITY INTERACTING TRANSIENT WITH A DOUBLE PLATEAU AND STRONG SODIUM ABSORPTION. The Astrophysical Journal, 807(1), [63]. https://doi.org/10.1088/0004-637X/807/1/63

de Jaeger, T., González-Gaitán, S., Hamuy, M., Galbany, L., Anderson, J. P., Phillips, M. M., Stritzinger, M. D., Carlberg, R. G., Sullivan, M., Gutiérrez, C. P., Hook, I. M., Howell, D. A., Hsiao, E. Y., Kuncarayakti, H., Ruhlmann-Kleider, V., Folatelli, G., Pritchet, C. & Basa, S. (2017). A Type II Supernova Hubble Diagram from the CSP-I, SDSS-II, and SNLS Surveys. The Astrophysical Journal, 835(2), 166. https://doi.org/10.3847/1538-4357/835/2/166

de Jaeger, T., Anderson, J. P., Galbany, L., Gonzalez-Gaitan, S., Hamuy, M., Phillips, M. M., Stritzinger, M. D., Contreras, C., Folatelli, G., Gutierrez, C. P., Hsiao, E. Y., Morrell, N., Suntzeff, N. B., Dessart, L. & Filippenko, A. V. (2018). Observed Type II supernova colours from the Carnegie Supernova Project-I. Monthly Notices of the Royal Astronomical Society, 476(4), 4592-4616. https://doi.org/10.1093/mnras/sty508

de Haas, Y., Pszczola, M., Soyeurt, H., Wall, E. & Lassen, J. (2017). Invited review: Phenotypes to genetically reduce greenhouse gas emissions in dairying. Journal of Dairy Science, 100(2), 855-870. https://doi.org/10.3168/jds.2016-11246

de Haas, Y., Pryce, J. E., Wall, E., McParland, S., Manzanilla-Pech, C., Difford, G. & Lassen, J. (2016). Genomic selection for methane emission. Journal of Animal Science, 94(supplement 5), 197-198. [0407]. https://doi.org/10.2527/jam2016-0407

de Groot, S., Mailund, T. & Hein, J. (2007). Comparative Annotation of Viral Genomes with Non-Conserved Gene Structure. Bioinformatics, 23(9), 1080-1089. https://doi.org/10.1093/bioinformatics/btm078

de Groot, S., Mailund, T., Lunter, G. & Hein, J. (2008). Investigating Selection on Viruses: A Statistical Alignment Approach. B M C Bioinformatics, 9(308).

de Freitas, M., Jensen, F. H., Tyne, J., Bejder, L. & Madsen, P. T. (2015). Echolocation parameters of Australian humpback dolphins (Sousa sahulensis) and Indo-Pacific bottlenose dolphins (Tursiops aduncus) in the wild. Acoustical Society of America. Journal, 137(6), 3033-3041. https://doi.org/10.1121/1.4921277

de Freitas, M., Smith, J. N., Jensen, F. H., Beedholm, K. & Madsen, P. T. (2018). Echolocation click source parameters of Australian snubfin dolphins (Orcaella heinsohni). Journal of the Acoustical Society of America, 143(4), 2564-2569. https://doi.org/10.1121/1.5034174

de Ford , C., Calderon, C., Sehgal, P., Fedosova, N., Murillo, R., Olesen, C., Nissen, P., Møller, J. V. & Merfort, I. (2015). Discovery of Tricyclic Clerodane Diterpenes as Sarco/Endoplasmic Reticulum Ca(2+)-ATPase Inhibitors and Structure-Activity Relationships. Journal of Natural Products, 78 (6), 1262–1270.

de Diego, R., Garrido, E., Fedorov, D. V. & Jensen, A. S. (2007). Neutron-³H potentials and the ⁵H-properties. Nuclear Physics A: Nuclear and Hadronic Physics, 786(1-4), 71-89.

de Diego, R., Garrido, E., Jensen, A. S. & Fedorov, D. V. (2008). Cluster sum rules for three-body systems with angular-momentum dependent interactions. Physical Review C (Nuclear Physics), 77(2).

de Diego, R., Garrido, E., Fedorov, D. V. & Jensen, A. S. (2010). Astrophysical reaction rates for ⁶He and ⁹Be production by electromagnetic radiative capture and four-body recombination. Journal of Physics: Conference Series (Online), 205(1), 012047. https://doi.org/10.1088/1742-6596/205/1/012047

de Diego, R., Garrido, E., Fedorov, D. V. & Jensen, A. S. (2010). Relative production rates of ⁶He, ⁹Be, ¹²C in astrophysical environments. EPL, 90(5), 52001. https://doi.org/10.1209/0295-5075/90/52001

de Diego, R., Garrido, E., Fedorov, D. V. & Jensen, A. S. (2011). Relative Production Rates of ⁶He, ⁹Be, ¹²C in Astrophysical Environments. Few-Body Systems, 50(1-4), 331-333. https://doi.org/10.1007/s00601-010-0162-0

de Diego, R., Garrido, E., Fedorov, D. V. & Jensen, A. S. (2011). The triple alpha reaction rate and the 2⁺ resonances in ¹²C. Physics Letters B: Particle Physics, Nuclear Physics and Cosmology, 695(1-4), 324-328. https://doi.org/10.1016/j.physletb.2010.11.001

de Diego, R., Garrido, E., Fedorov, D. V. & Jensen, A. S. (2014). Production of ⁶He and ⁹Be by radiative capture and four-body recombination. The European Physical Journal A: Hadrons and Nuclei, 50(6), 1-13. https://doi.org/10.1140/epja/i2014-14093-x

de Diego, I., Ksiazek, M., Mizgalska, D., Koneru, L., Golik, P., Szmigielski, B., Nowak, M., Nowakowska, Z., Potempa, B., Houston, J. A., Enghild, J. J., Thøgersen, I. B., Gao, J., Kwan, A. H., Trewhella, J., Dubin, G., Gomis-Rüth, F. X., Nguyen, K-A. & Potempa, J. (2016). The outer-membrane export signal of Porphyromonas gingivalis type IX secretion system (T9SS) is a conserved C-terminal β-sandwich domain. Scientific Reports, 6, 23123. https://doi.org/10.1038/srep23123

de Bie, H., Ørsted, B., Somberg, P. & Souček, V. (2012). Dunkl operators and a family of realizations of osp(1|2). Transactions of the American Mathematical Society, 364(7), 3875-3902. https://doi.org/10.1090/S0002-9947-2012-05608-X

de Berg, M., Tsirogiannis, C. & Wilkinson, B. T. (2015). Fast computation of categorical richness on raster data sets and related problems. In GIS '15: Proceedings of the 23rd SIGSPATIAL International Conference on Advances in Geographic Information Systems [18] https://doi.org/10.1145/2820783.2820825

de Berg, M., Tsirogiannis, C. & Wilkinson, B. (2015). Fast Computation of Categorical Richness on Raster Data Sets and Related Problems. In Proceedings. Workshop on Massive Data Algorithmics (MASSIVE) (pp. 86-107)

de Bakker, D. M., Wilkinson, M. & Jensen, B. (2015). Extreme variation in the atrial septation of caecilians (Amphibia Gymnophiona). Journal of Anatomy, 226(1), 1-12. https://doi.org/10.1111/joa.12255

de Almeida Campos, R. C., Kotlyar, A. & Ferapontova, E. (2014). DNA Biosensor Exploiting Direct DNA Immobilization onto Gold via Phosphorothioated dA Tags. Abstract from 47th Heyrovsky Discussion, Prague, Czech Republic.

de Almeida Campos, R. C. & Ferapontova, E. (2014). Electrochemistry of weakly adsorbed species: Voltammetric analysis of electron transfer between gold electrodes and Ru hexaamine electrostatically interacting with DNA duplexes. Electrochimica Acta, 126, 151-157. https://doi.org/10.1016/j.electacta.2013.07.083

de Almeida Campos, R. C. & Ferapontova, E. (2013). Electrochemistry of weakly adsorbed species: Voltammetric analysis of electron transfer between gold electrodes and Ru(NH3)6 3+ electrostatically interacting with DNA. Abstract from 6th International Workshop on Surface Modification for Chemical and Biochemical Sensing, Warsaw, Poland.

de Almeida Campos, R. C., Horsman, M. R. & Ferapontova, E. (2014). Electrochemical analysis of miRNA deregulated during the hypoxia conditions. Abstract from 12th Topical Meeting of the International Society of Electrochemistry. Bioelectrochemistry 2013., Bochum, Germany.

de Almeida Campos, R. C., Kotlyar, A. & Ferapontova, E. (2014). DNA-Mediated Electron Transfer in DNA Duplexes Tethered to Gold Electrodes via Phosphorothioated dA Tags. Langmuir, 30(40), 11853–11857. https://doi.org/10.1021/la502766g

de Almeida Campos, R. C., Zhang, S., Majikes, J. M., Ferraz, L. C. C., LaBean, T. H., Dong, M. D. & Ferapontova, E. E. (2015). Electronically addressable nanomechanical switching of i-motif DNA origami assembled on basal plane HOPG. Chemical Communications, 51(74), 14111-14114. https://doi.org/10.1039/c5cc04678e

de Almeida, A. M. & Bendixen, E. (2012). Pig proteomics: A review of a species in the crossroad between biomedical and food sciences. Journal of Proteomics, 75(14), 4296–4314. https://doi.org/10.1016/j.jprot.2012.04.010

da Silva, A. P. B., Ellen, R. P., Sørensen, E. S., Goldberg, H. A., Zohar, R. & Sodek, J. (2009). Osteopontin attenuation of dextran sulfate sodium-induced colitis in mice. Laboratory Investigation, 89(10), 1169-81.

da Silva, F. F., Varella, M. T. D. N., Jones, N. C., Hoffmann, S. V., Denifl, S., Bald, I. & Kopyra, J. (2019). Electron-induced reactions in 3-bromo-pyruvic acid. Chemistry - A European Journal, 25(21), 5498-5506. https://doi.org/10.1002/chem.201806132

da Rosa, C. A., Puertas, F. & Galetti, M. (2017). The feral pig as prey for jaguars: A reply to the 'Letter from the Conservation Front Line' by Verdade et al. Animal Conservation, 20(2), 111-112. https://doi.org/10.1111/acv.12312

da Cunha, J. A. C., Arias, C. A., Carvalho, P., Rysulova, M., Canals, J. M., Pérez, G., Bosch, M. G. & Morató, J. F. (2018). “WETWALL” — an innovative design concept for the treatment of wastewater at an urban scale. Desalination and Water Treatment, 109(March), 205-220. https://doi.org/10.5004/dwt.2018.22143, https://doi.org/10.5004/dwt.2018.22143

da Cunha, J. A. C., Formosa, J., Chimenos, J. M., Canals, J., Bosch Gonzalez, M., Rosell, J. R., Peixoto da Silva, H., Morato, J., Brix, H. & Arias, C. A. (2019). Crushed Autoclaved Aerated Concrete (CAAC), a Potential Reactive Filter Medium for Enhancing Phosphorus Removal in Nature-Based Solutions—Preliminary Batch Studies. Water, 11(7), [1442]. https://doi.org/10.3390/w11071442

d'Ozouville, N., Auken, E., Sørensen, K. I., Violette, S., Marsily, G. D., Deffontaines, B. & Merlen, G. (2008). Extensive perched aquifer and structural implications revealed by 3D resistivity mapping in a Galapagos volcano. Earth and Planetary Science Letters, (269), 518-522.

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